# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fh10956.fasta.huge -Q ../query/KIAA1943.ptfa ./tmplib.25089 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1943, 1054 aa vs ./tmplib.25089 library 1986451 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 4.6777+/-0.0045; mu= 15.9910+/- 0.306 mean_var=76.3466+/-18.345, 0's: 0 Z-trim: 2 B-trim: 0 in 0/40 Lambda= 0.146784 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 39, opt: 27, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1500 ( 2240 res) hh12031s1 (2240) 191 51.4 1.6e-06 >>KIAA1500 ( 2240 res) hh12031s1 (2240 aa) initn: 141 init1: 86 opt: 191 Z-score: 209.0 bits: 51.4 E(): 1.6e-06 Smith-Waterman score: 219; 21.726% identity (50.000% similar) in 672 aa overlap (99-720:772-1408) 70 80 90 100 110 120 KIAA19 EAYLLQILPHTIRGGAEVSEPAELLFYIQDSDDVY----GLITFFPMENQKIESSPGERY ::.:. .::.: . . .. . : KIAA15 LIRYVLHKEKIREMMDSFQFLVKDSKPNVVSDNVFHIQWSLISF-KYTSYNVSEKAGS-- 750 760 770 780 790 130 140 150 160 170 180 KIAA19 LSLSFTRLGGTKGDVRLLYSVLYIPAGAVDPLQAKEGILN-ISRRNDLIFPEQKTQVTTK .:.. : :. . . .: . :.. . .... : . . ... : :.. . KIAA15 VSVTVQRTGNLNQYAIVLCRTEQGTASSSSRVSSQPGQQDYVEYAGQVQFDEREDTKSCT 800 810 820 830 840 850 190 200 210 220 230 240 KIAA19 LPIRNDAFLQNGAHFLVQLETVELLNIIPLIPPISPRFGEICNISLLVTPAIANGEIGFL . : .: ..: : :.: : .::. . ..... . . . : KIAA15 IVINDDDVFENVESFTVELSM-----------PAYALLGEFTQAKVIINDTEDEPTLEFD 860 870 880 890 900 250 260 270 280 290 300 KIAA19 SNLPIILHEPEDFAAEVVYIPLHRDGTDGQ--ATVYWSLKPSGFNSKAVTPDDIGPFNGS ... . .: : .. :..: : .. ... ... :...:. . .. . :.. KIAA15 KKIYWV-NESAGF----LFAPIERKGDASSIVSAICYTVPKSAMGSSLYALESGSDFKSR 910 920 930 940 950 960 310 320 330 340 350 KIAA19 -------VLFLSGQSDTTINITIKGDDIPEMNETVTLSLDRVNVENQVLKSGYTSRDLII :.: : . .: .. . :. : .: ..: .. .: . :.. :: KIAA15 GMSAASRVIFGPGVTMSTCDVMLIDDSEYEEEEEFEIALADAS-DNARIGRVATAKVLI- 970 980 990 1000 1010 1020 360 370 380 390 400 410 KIAA19 LENDDPGGVFEFSPASRGPYVIKEGESVELHIIRSRGSLVKQFLHYRVEPRDSNEFYGNT . :. . : .. . : ... .:.. .:: .:. .. : : :. .. KIAA15 ---SGPNDASTVSLGNTAFTVSEDAGTVKIPVIR-HGTDLSTFASVWCATRPSDPASATP 1030 1040 1050 1060 1070 420 430 440 450 460 KIAA19 GV--------LEFKPG--EREIVITLL--ARLDGIPELDEHYWVVLSSHGERESKLGSAT :: .:: :: :. ..:.: .. : :. . . :..: . .: .: KIAA15 GVDYVPSSRKVEFGPGVIEQYCTLTILDDTQYPVIEGLETFVFFLSSAQGAELTKPFQA- 1080 1090 1100 1110 1120 1130 470 480 490 500 510 520 KIAA19 IVNITILKNDDPHGIIEFVSDGLIVMINESKGDAIYSAVYDVVRNRG-NFGDVSVSWVVS .. :. .: : ..:..: :.: .:. . . :. . . : : : KIAA15 VIAINDTFQDVPS--MQFAKDLLLVKEKEGVLHVPITRSGDLSYESSVRCYTQSHSAQVM 1140 1150 1160 1170 1180 1190 530 540 550 560 570 KIAA19 PDFTQDVFPVQGTVVFGDQEFSKNITIYSLPDEIPEEMEEFTVILL----NGTGGAKVGN :: . .. ..: . :: :.: : . : :.: : : : .::..:. KIAA15 EDFEERQNADSSRITFLKGDKVKNCTVYIHDDSMFEPEEQFRVYLGLPLGNHWSGARIGK 1200 1210 1220 1230 1240 1250 580 590 600 610 620 630 KIAA19 RTTATLRIRRNDD-P-IYFAEPRV-VRVQEGETA----NFTVLRNGSVDVTCMVQYATKD . ::. : ..: : : : : :: : : :. :.: :. . : :. .:.: KIAA15 NNMATITISNDEDAPTIEFEEAAYQVREPAGPDAIAILNIKVIRRGDQNRTSKVRCSTRD 1260 1270 1280 1290 1300 1310 640 650 660 670 680 KIAA19 GKATARERDFIPVEKGETLIFEVGSRQQ--SISIFVNEDG--------IPETDEPFYIIL :.: . :. : :...: : : . .. :. ::: . :.: .: KIAA15 GSAQSGV-DYYP--KSRVLKFSPGVDHIFFKVEILSNEDREWHESFSLVLGPDDPVEAVL 1320 1330 1340 1350 1360 1370 690 700 710 720 730 KIAA19 FNSTGDTVVY--QYGVATVIIEANDDPNGIFSLEPIDKAVEEGKTNAFWILRHRGYFGSV . : ::. : .....:. : : . .: :. ::: KIAA15 GDVTTATVTILDQEAAGSLILPA---PPIVVTLADYDH-VEEVTKEGVKKSPSPGYPLVC 1380 1390 1400 1410 1420 740 750 760 770 780 790 KIAA19 SVSWQLFQNDSALQPGQEFYETSGTVNFMDGEEAKPIILHAFPDKIPEFNEFYFLKLVNI KIAA15 VTPCDPHFPRYAVMKERCSEAGINQTSVQFSWEVAAPTDGNGARSPFETITDNTPFTSVN 1430 1440 1450 1460 1470 1480 1054 residues in 1 query sequences 1986451 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:23:00 2008 done: Thu Dec 18 15:23:01 2008 Total Scan time: 0.680 Total Display time: 0.060 Function used was FASTA [version 34.26.5 April 26, 2007]