# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/ah04227.fasta.huge -Q ../query/KIAA1940.ptfa ./tmplib.25089 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1940, 821 aa
 vs ./tmplib.25089 library

1986684 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 10.3921+/-0.0102; mu= -6.9875+/- 0.694
 mean_var=395.1765+/-94.766, 0's: 0 Z-trim: 2  B-trim: 0 in 0/40
 Lambda= 0.064518

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0844  ( 438 res)   hk05227                     ( 438)  350 46.6 6.7e-06


>>KIAA0844  ( 438 res)   hk05227                          (438 aa)
 initn: 304 init1: 304 opt: 350  Z-score: 197.8  bits: 46.6 E(): 6.7e-06
Smith-Waterman score: 350;  39.474% identity (75.000% similar) in 152 aa overlap (147-298:178-329)

        120       130       140       150       160       170      
KIAA19 PPPGPGPGPCPGPASASPASPSPADVAYEEGLARLKIRALEKLEVDRRLERLSEEVEQKI
                                     ::     .:  . .: ....:. : :.. :
KIAA08 VVAERPVSYVQTYTAMDLHADSLDGTRSGPGLPTSDTKASFEAHVREKFNRMVEAVDRTI
       150       160       170       180       190       200       

        180       190       200       210       220       230      
KIAA19 AGQVGRLQAELERKAAELETARQESARLGREKEELEERASELSRQVDVSVELLASLKQDL
         .. .:  :: .:.:::  .:   ..: ..:.:...:   :.:::::.::..: :.: :
KIAA08 EKRIDKLTKELAQKTAELLEVRAAFVQLTQKKQEVQRRERALNRQVDVAVEMIAVLRQRL
       210       220       230       240       250       260       

        240       250       260       270       280       290      
KIAA19 VHKEQELSRKQQEVVQIDQFLKETAAREASAKLRLQQFIEELLERADRAERQLQVISSSC
       ...:.:: ::..::: ...::. .: .:...: :::.:::.::.:.. ::.::.  .:. 
KIAA08 TESEEELLRKEEEVVTFNHFLEAAAEKEVQGKARLQDFIENLLQRVELAEKQLEYYQSQQ
       270       280       290       300       310       320       

        300       310       320       330       340       350      
KIAA19 GSTPSASLGRGGGGGGAGPNARGPGRMREHHVGPAVPNTYAVSRHGSSPSTGASSRVPAA
       .:                                                          
KIAA08 ASGFVRDLSGHVLTDISSNRKPKCLSRGHPHSVCNHPDLKSHFHPKGRNHLKKAKDDRAS
       330       340       350       360       370       380       




821 residues in 1 query   sequences
1986684 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:22:53 2008 done: Thu Dec 18 15:22:54 2008
 Total Scan time:  0.610 Total Display time:  0.010

Function used was FASTA [version 34.26.5 April 26, 2007]