hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-16442653/chunk_1/iprscan-20080502-16442653.nocrc
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Query sequence: KIAA1926
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00193.8.fs Extracellular link domain                      294.0   3.3e-132   2
PF00193.8.ls Extracellular link domain                      297.8    1.9e-86   2
PF07686.7.fs Immunoglobulin V-set domain                     31.5      2e-08   1
PF07686.7.ls Immunoglobulin V-set domain                     32.8    1.1e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF07686.7.fs   1/1      56   157 ..     1   126 [.    31.5    2e-08
PF07686.7.ls   1/1      56   189 ..     1   141 []    32.8  1.1e-06
PF00193.8.fs   1/2     172   277 ..     1   104 []   162.0  4.9e-73
PF00193.8.ls   1/2     172   277 ..     1   104 []   163.9  3.7e-46
PF00193.8.fs   2/2     283   374 ..     1   104 []   132.0  1.4e-59
PF00193.8.ls   2/2     283   374 ..     1   104 []   133.9  4.2e-37

Alignments of top-scoring domains:
PF07686.7.fs: domain 1 of 1, from 56 to 157: score 31.5, E = 2e-08
                   *->qsqvtqepprWGLLLASLfWptsvtvaeGgsvtLpCtysGtfddsss
                      +++v++  p+             v+  +Gg++ LpC y+        
    KIAA1926    56    SVVVQT-APG------------QVVSHRGGTIVLPCRYH---YEAAA 86   

                   ssgtf.siyWyrq.qppgkgpeliiisyysyystsegngtvgerfkgrvt
                    ++++ ++ W +   p+          +   ++  +++++  ++++gr +
    KIAA1926    87 HGHDGvRLKWTKVvDPL---------AFTDVFVALGPQHRAFGSYRGRAE 127  

                   lsgnpskgdfsLtIsnlqlsDsGtYyCavsn<-*
                   l+g+++ gd+sL ++n++l D G Y C v n   
    KIAA1926   128 LQGDGP-GDASLVLRNVTLQDYGRYECEVTN    157  

PF07686.7.ls: domain 1 of 1, from 56 to 189: score 32.8, E = 1.1e-06
                   *->qsqvtqepprWGLLLASLfWptsvtvaeGgsvtLpCtysGtfddsss
                      +++v++  p+             v+  +Gg++ LpC y+        
    KIAA1926    56    SVVVQT-APG------------QVVSHRGGTIVLPCRYH---YEAAA 86   

                   ssgtf.siyWyrq.qppgkgpeliiisyysyystsegngtvgerfkgrvt
                    ++++ ++ W +   p+          +   ++  +++++  ++++gr +
    KIAA1926    87 HGHDGvRLKWTKVvDPL---------AFTDVFVALGPQHRAFGSYRGRAE 127  

                   lsgnpskgdfsLtIsnlqlsDsGtYyCavsns.................n
                   l+g+++ gd+sL ++n++l D G Y C v n+ +++ +  + + ++   +
    KIAA1926   128 LQGDGP-GDASLVLRNVTLQDYGRYECEVTNEleddagmvkldlegvvfP 176  

                   elvfgggtrLtVl<-*
                   ++  gg ++Lt     
    KIAA1926   177 YHPRGGRYKLTFA    189  

PF00193.8.fs: domain 1 of 2, from 172 to 277: score 162.0, E = 4.9e-73
                   *->GeVFhyrapsgRYkltFeEAqaaClrqgAriATtgQLyAAwkgGfdq
                      G+VF+y +++gRYkltF+EAq+aC++q++ +A+ +QL AAw++G+d+
    KIAA1926   172    GVVFPYHPRGGRYKLTFAEAQRACAEQDGILASAEQLHAAWRDGLDW 218  

                   CdAGWLADgsVRYPIvkPRenCg.........GdkdgfpGVRtyYlfpNQ
                   C+AGWL DgsV+YP+ +PRe+Cg+ +++++ +G+ d   G R+y      
    KIAA1926   219 CNAGWLRDGSVQYPVNRPREPCGglggtgsagGGGDANGGLRNY------ 262  

                   TGfpddpssrYDvYCF<-*
                    G++ +  +rYD++CF   
    KIAA1926   263 -GYRHNAEERYDAFCF    277  

PF00193.8.ls: domain 1 of 2, from 172 to 277: score 163.9, E = 3.7e-46
                   *->GeVFhyrapsgRYkltFeEAqaaClrqgAriATtgQLyAAwkgGfdq
                      G+VF+y +++gRYkltF+EAq+aC++q++ +A+ +QL AAw++G+d+
    KIAA1926   172    GVVFPYHPRGGRYKLTFAEAQRACAEQDGILASAEQLHAAWRDGLDW 218  

                   CdAGWLADgsVRYPIvkPRenC.........gGdkdgfpGVRtyYlfpNQ
                   C+AGWL DgsV+YP+ +PRe+C++ +++++ gG+ d   G R+y      
    KIAA1926   219 CNAGWLRDGSVQYPVNRPREPCgglggtgsaGGGGDANGGLRNY------ 262  

                   TGfpddpssrYDvYCF<-*
                    G++ +  +rYD++CF   
    KIAA1926   263 -GYRHNAEERYDAFCF    277  

PF00193.8.fs: domain 2 of 2, from 283 to 374: score 132.0, E = 1.4e-59
                   *->GeVFhyrapsgRYkltFeEAqaaClrqgAriATtgQLyAAwkg.Gfd
                      G+VF++ +      + F  A++aC+++gA  A++gQL+AAwk + +d
    KIAA1926   283    GRVFFLKPLR---PVPFSGAARACAARGAAVAKVGQLFAAWKLqLLD 326  

                   qCdAGWLADgsVRYPIvkPRenCgGdkdgfpGVRtyYlfpNQTGfpddps
                   +C AGWLADgs RYPIv+PR++CgG     pGVR +       Gfpd + 
    KIAA1926   327 RCTAGWLADGSARYPIVNPRARCGGRR---PGVRSL-------GFPDATR 366  

                   srYDvYCF<-*
                    +++vYC+   
    KIAA1926   367 RLFGVYCY    374  

PF00193.8.ls: domain 2 of 2, from 283 to 374: score 133.9, E = 4.2e-37
                   *->GeVFhyrapsgRYkltFeEAqaaClrqgAriATtgQLyAAwkg.Gfd
                      G+VF++ +      + F  A++aC+++gA  A++gQL+AAwk + +d
    KIAA1926   283    GRVFFLKPLR---PVPFSGAARACAARGAAVAKVGQLFAAWKLqLLD 326  

                   qCdAGWLADgsVRYPIvkPRenCgGdkdgfpGVRtyYlfpNQTGfpddps
                   +C AGWLADgs RYPIv+PR++CgG     pGVR +       Gfpd + 
    KIAA1926   327 RCTAGWLADGSARYPIVNPRARCGGRR---PGVRSL-------GFPDATR 366  

                   srYDvYCF<-*
                    +++vYC+   
    KIAA1926   367 RLFGVYCY    374  

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