hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-15541125/chunk_1/iprscan-20080502-15541125.nocrc
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Query sequence: KIAA1896
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00054                                                  26.9     0.0027   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00054    1/2     138   166 ..     1    29 []    11.4      6.2
SM00054    2/2     169   197 ..     1    29 []    15.6      1.9

Alignments of top-scoring domains:
SM00054: domain 1 of 2, from 138 to 166: score 11.4, E = 6.2
                   *->elkeaFrefDkDgdGkIdfeEfkallksl<-*
                        k++ +  DkD dG++dfeEf++ l+     
    KIAA1896   138    FPKKIVQAGDKDLDGQLDFEEFVHYLQDH    166  

SM00054: domain 2 of 2, from 169 to 197: score 15.6, E = 1.9
                   *->elkeaFrefDkDgdGkIdfeEfkallksl<-*
                      +l+ +F+ +Dk +dG+Id +E ++ l+ l   
    KIAA1896   169    KLRLVFKSLDKKNDGRIDAQEIMQSLRDL    197  

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