hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-15541125/chunk_1/iprscan-20080502-15541125.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1896 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00153.17.ls Mitochondrial carrier protein 327.3 2.4e-95 3 PF00153.17.fs Mitochondrial carrier protein 321.5 1.6e-94 3 PF00036.22.fs EF hand 42.6 1.4e-10 3 PF00036.22.ls EF hand 45.0 2.4e-10 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00036.22.fs 1/3 138 166 .. 1 29 [] 18.7 0.00047 PF00036.22.ls 2/2 169 197 .. 1 29 [] 24.2 0.00043 PF00036.22.fs 2/3 169 197 .. 1 29 [] 22.2 5.2e-05 PF00153.17.ls 1/3 284 374 .. 1 100 [] 119.0 1.3e-32 PF00153.17.fs 1/3 284 374 .. 1 100 [] 117.0 4.5e-34 PF00153.17.ls 2/3 378 467 .. 1 100 [] 124.4 3e-34 PF00153.17.fs 2/3 378 467 .. 1 100 [] 122.5 1.1e-35 PF00153.17.ls 3/3 475 567 .. 1 100 [] 83.9 4.4e-22 PF00153.17.fs 3/3 475 567 .. 1 100 [] 82.0 1e-23 Alignments of top-scoring domains: PF00036.22.fs: domain 1 of 3, from 138 to 166: score 18.7, E = 0.00047 *->elkeaFkefDkDgDGkIsfeEfkaalkkl<-* k++ + DkD DG+++feEf+++l++ KIAA1896 138 FPKKIVQAGDKDLDGQLDFEEFVHYLQDH 166 PF00036.22.ls: domain 2 of 2, from 169 to 197: score 24.2, E = 0.00043 *->elkeaFkefDkDgDGkIsfeEfkaalkkl<-* +l+ +Fk +Dk +DG+I+ +E ++ l++l KIAA1896 169 KLRLVFKSLDKKNDGRIDAQEIMQSLRDL 197 PF00036.22.fs: domain 2 of 3, from 169 to 197: score 22.2, E = 5.2e-05 *->elkeaFkefDkDgDGkIsfeEfkaalkkl<-* +l+ +Fk +Dk +DG+I+ +E ++ l++l KIAA1896 169 KLRLVFKSLDKKNDGRIDAQEIMQSLRDL 197 PF00153.17.ls: domain 1 of 3, from 284 to 374: score 119.0, E = 1.3e-32 *->sflasllaGgiAGaiaatvtyPlDvvKtRLQstavadassaaggsrk ++++l+aGg AGa+++t+t+PlD++K+++Q ++++ KIAA1896 284 MWWRHLVAGGGAGAVSRTCTAPLDRLKVLMQ---------VHASRSN 321 YkgildcfkkiykeEGirgLYkGllpnllrvaPyaaiyFgtYEtlKklll gi+ f ++++e+G r+L++G++ n+l++aP++ai+F++YE++K+l KIAA1896 322 NMGIVGGFTQMIREGGARSLWRGNGINVLKIAPESAIKFMAYEQIKRLVG 371 kkk<-* ++ KIAA1896 372 SDQ 374 PF00153.17.fs: domain 1 of 3, from 284 to 374: score 117.0, E = 4.5e-34 *->sflasllaGgiAGaiaatvtyPlDvvKtRLQstavadassaaggsrk ++++l+aGg AGa+++t+t+PlD++K+++Q ++++ KIAA1896 284 MWWRHLVAGGGAGAVSRTCTAPLDRLKVLMQ---------VHASRSN 321 YkgildcfkkiykeEGirgLYkGllpnllrvaPyaaiyFgtYEtlKklll gi+ f ++++e+G r+L++G++ n+l++aP++ai+F++YE++K+l KIAA1896 322 NMGIVGGFTQMIREGGARSLWRGNGINVLKIAPESAIKFMAYEQIKRLVG 371 kkk<-* ++ KIAA1896 372 SDQ 374 PF00153.17.ls: domain 2 of 3, from 378 to 467: score 124.4, E = 3e-34 *->sflasllaGgiAGaiaatvtyPlDvvKtRLQstavadassaaggsrk + ++l+aG++AGaia++ +yP++v+KtR+ +++ + KIAA1896 378 RIHERLVAGSLAGAIAQSSIYPMEVLKTRMA----------LRKTGQ 414 YkgildcfkkiykeEGirgLYkGllpnllrvaPyaaiyFgtYEtlKklll Y+g+ldc+++i++ EG++++YkG +pn+l+++Pya+i +++YEtlK+ +l KIAA1896 415 YSGMLDCARRILAREGVAAFYKGYVPNMLGIIPYAGIDLAVYETLKNAWL 464 kkk<-* ++ KIAA1896 465 QHY 467 PF00153.17.fs: domain 2 of 3, from 378 to 467: score 122.5, E = 1.1e-35 *->sflasllaGgiAGaiaatvtyPlDvvKtRLQstavadassaaggsrk + ++l+aG++AGaia++ +yP++v+KtR+ +++ + KIAA1896 378 RIHERLVAGSLAGAIAQSSIYPMEVLKTRMA----------LRKTGQ 414 YkgildcfkkiykeEGirgLYkGllpnllrvaPyaaiyFgtYEtlKklll Y+g+ldc+++i++ EG++++YkG +pn+l+++Pya+i +++YEtlK+ +l KIAA1896 415 YSGMLDCARRILAREGVAAFYKGYVPNMLGIIPYAGIDLAVYETLKNAWL 464 kkk<-* ++ KIAA1896 465 QHY 467 PF00153.17.ls: domain 3 of 3, from 475 to 567: score 83.9, E = 4.4e-22 *->sflasllaGgiAGaiaatvtyPlDvvKtRLQstavadassaaggsrk ++++ l++G ++ ++++++ yPl +v+tR+Q +a+ + KIAA1896 475 GVFVLLACGTMSSTCGQLASYPLALVRTRMQ-------AQASIEGAP 514 YkgildcfkkiykeEGirgLYkGllpnllrvaPyaaiyFgtYEtlKklll ++ + fk+i+++EG +gLY+Gl pn+++v+P+ +i ++YE lK l KIAA1896 515 EVTMSSLFKHILRTEGAFGLYRGLAPNFMKVIPAVSISYVVYENLKITLG 564 kkk<-* + KIAA1896 565 VQS 567 PF00153.17.fs: domain 3 of 3, from 475 to 567: score 82.0, E = 1e-23 *->sflasllaGgiAGaiaatvtyPlDvvKtRLQstavadassaaggsrk ++++ l++G ++ ++++++ yPl +v+tR+Q +a+ + KIAA1896 475 GVFVLLACGTMSSTCGQLASYPLALVRTRMQ-------AQASIEGAP 514 YkgildcfkkiykeEGirgLYkGllpnllrvaPyaaiyFgtYEtlKklll ++ + fk+i+++EG +gLY+Gl pn+++v+P+ +i ++YE lK l KIAA1896 515 EVTMSSLFKHILRTEGAFGLYRGLAPNFMKVIPAVSISYVVYENLKITLG 564 kkk<-* + KIAA1896 565 VQS 567 //