# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fk06388.fasta.huge -Q ../query/KIAA1896.ptfa ./tmplib.25089 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1896, 568 aa
 vs ./tmplib.25089 library

1986937 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 4.5898+/-0.00469; mu= 15.7496+/- 0.320
 mean_var=80.1887+/-19.005, 0's: 0 Z-trim: 2  B-trim: 5 in 1/39
 Lambda= 0.143225

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0446  ( 351 res)   fk03072                     ( 351)  208 52.6 5.9e-08


>>KIAA0446  ( 351 res)   fk03072                          (351 aa)
 initn: 172 init1: 106 opt: 208  Z-score: 234.7  bits: 52.6 E(): 5.9e-08
Smith-Waterman score: 324;  23.279% identity (55.082% similar) in 305 aa overlap (286-560:41-337)

         260       270       280             290       300         
KIAA18 YWKHSTIFDVGENLTVPDEFTVEERQTGMWWRHL------VAGGGAGAVSRTCTAPLDRL
                                     :.::      : : .   . :. . :.  .
KIAA04 WSSPQTRWSRRSLRRSSGTMEDKRNIQIIEWEHLDKKKFYVFGVAMTMMIRVSVYPFTLI
               20        30        40        50        60        70

     310       320       330       340       350       360         
KIAA18 KVLMQVHASRSNNMGIVGGFTQMIREGGARSLWRGNGINVLKIAPESAIKFMAYEQIKRL
       .. .::. ..:   :   .: ...:  :  .:.::  .:.. .   .     .::  ...
KIAA04 RTRLQVQKGKSLYHGTFDAFIKILRADGITGLYRGFLVNTFTLIS-GQCYVTTYELTRKF
               80        90       100       110        120         

     370       380       390       400       410                   
KIAA18 VGSDQETLRIHERLVAGSLAGAIAQSSIYPMEVLKTRMALRKTGQYSGML----------
       :.. ...  . . ::::. :. .:::   :..:.. .. ... :.  : .          
KIAA04 VADYSQSNTV-KSLVAGGSASLVAQSITVPIDVVSQHLMMQRKGEKMGRFQVRGNPEGQG
     130        140       150       160       170       180        

             420       430       440       450       460           
KIAA18 --------DCARRILAREGVAAFYKGYVPNMLGIIPYAGIDLAVYETLKNA---WLQH--
               :  :.::  .:. .::.::: ..:  :: ...    :.        :. .  
KIAA04 VVAFGQTKDIIRQILQADGLRGFYRGYVASLLTYIPNSAVWWPFYHFYAAIVFPWIPEQL
      190       200       210       220       230       240        

         470       480       490       500       510       520     
KIAA18 -YAVNSADPGVFVLLACGTMSSTCGQLASYPLALVRTRMQAQASIEGAPEVTMSSLFKHI
        :   .  : .    . : .... ... . :. ..:::.:    .::   . ..  :...
KIAA04 SYLCPKECPHIVFQAVSGPLAAATASILTNPMDVIRTRVQ----VEGKNSIILT--FRQL
      250       260       270       280           290         300  

         530       540       550       560              
KIAA18 LRTEGAFGLYRGLAPNFMKVIPAVSISYVVYENLKITLGVQSR      
       .  :: .::..::.  .... :.. .  : ::.::              
KIAA04 MAEEGPWGLMKGLSARIISATPSTIVIVVGYESLKKLSLRPELVDSRHW
            310       320       330       340       350 




568 residues in 1 query   sequences
1986937 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:21:13 2008 done: Thu Dec 18 15:21:13 2008
 Total Scan time:  0.480 Total Display time:  0.010

Function used was FASTA [version 34.26.5 April 26, 2007]