hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-15364197/chunk_1/iprscan-20080502-15364197.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1886 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02891.10.ls MIZ/SP-RING zinc finger 116.2 8.7e-32 1 PF02891.10.fs MIZ/SP-RING zinc finger 114.3 3.3e-31 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02891.10.fs 1/1 331 380 .. 1 54 [] 114.3 3.3e-31 PF02891.10.ls 1/1 331 380 .. 1 54 [] 116.2 8.7e-32 Alignments of top-scoring domains: PF02891.10.fs: domain 1 of 1, from 331 to 380: score 114.3, E = 3.3e-31 *->vsLkCPiSfsRIsiPvRgrfCkHlQCFDlksfLesneqtptFNmRWn vsLkCPi+f+RI +P+Rg+ C+H+QCFDl+s+L++n++++t W+ KIAA1886 331 VSLKCPITFRRIQLPARGHDCRHIQCFDLESYLQLNCERGT----WR 373 CPvCskp<-* CPvC+k KIAA1886 374 CPVCNKT 380 PF02891.10.ls: domain 1 of 1, from 331 to 380: score 116.2, E = 8.7e-32 *->vsLkCPiSfsRIsiPvRgrfCkHlQCFDlksfLesneqtptFNmRWn vsLkCPi+f+RI +P+Rg+ C+H+QCFDl+s+L++n++++t W+ KIAA1886 331 VSLKCPITFRRIQLPARGHDCRHIQCFDLESYLQLNCERGT----WR 373 CPvCskp<-* CPvC+k KIAA1886 374 CPVCNKT 380 //