hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-15295776/chunk_1/iprscan-20080502-15295776.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1883 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00219 244.4 9.2e-69 1 SM00220 49.4 8.5e-13 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00219 1/1 153 428 .. 1 280 [] 244.4 9.2e-69 SM00220 1/1 153 1371 .. 1 231 [] 49.4 8.5e-13 Alignments of top-scoring domains: SM00219: domain 1 of 1, from 153 to 428: score 244.4, E = 9.2e-69 *->ltlgkkLGeGaFGeVykGtlk.....ieVAVKtLkeda....keeFl l+ ++++G+G FG+V +G+ ++ ++ +V VK L+++a++ +++ F+ KIAA1883 153 LSYLQEIGSGWFGKVILGEIFsdytpAQVVVKELRASAgpleQRKFI 199 rEakiMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdLld +Ea+ ++l +HpN++++lG c+e P +++mE++ +GdL+ KIAA1883 200 SEAQPYRSL--QHPNVLQCLGLCVET-------LPFLLIMEFCQLGDLKR 240 yLrknrpk.........lslsdLlsfAlQIAkGMeYLesknfvHRDLAAR yLr+ rp ++ +++ ++ l++L + l IA+G ++L+s+n+vH DLA R KIAA1883 241 YLRAQRPPeglspelppRDLRTLQRMGLEIARGLAHLHSHNYVHSDLALR 290 NcLvgenkvvKIsDFGLsRdlyddDkkGeskdyYrkkggkggktllPirW NcL++++++v+I+D GL+ y + dyY + ++ ++P+rW KIAA1883 291 NCLLTSDLTVRIGDYGLAHSNYKE-------DYYLT----PERLWIPLRW 329 mAPEsl..kdgkF.....tskSDVWSFGVlLWEiftlGeqPYpgeiqqfm APE l++ +g+F +++ +S +WS GV+LWE+f +G+qPY + KIAA1883 330 AAPELLgeLHGTFmvvdqSRESNIWSLGVTLWELFEFGAQPYRH-----L 374 sneevleylkkGy..RlpkPendlpiSsvtCPdelYdlMlqCWaedPedR s+eevl+++ + + l +P lp d Yd+ ++CW+ P++R KIAA1883 375 SDEEVLAFVVRQQhvKLARPRLKLP-----YADYWYDILQSCWRP-PAQR 418 PtFselverl<-* P+ s+l +l KIAA1883 419 PSASDLQLQL 428 SM00220: domain 1 of 1, from 153 to 1371: score 49.4, E = 8.5e-13 *->YellkklGkGaFGkVylardkk..tgrlvAiKvik........eril l+++G+G FGkV l+ ++ t +v +K+++ + ++ ++++++ KIAA1883 153 LSYLQEIGSGWFGKVILGEIFSdyTPAQVVVKELRasagpleqRKFI 199 rEikiLkk.dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllkkrgr +E + ++ +HPN+ ++++ ++++ + l+mE+c GdL+++l+ +++ KIAA1883 200 SEAQPYRSlQHPNVLQCLGLCVEtLPFLLIMEFCQL--GDLKRYLRAQRP 247 rglrkvlsE.e.......arfyfrQilsaLeYLHsqgIiHRDLKPeNiLL + +ls++ ++++ ++ +++ +i+++L++LHs++ +H DL N LL KIAA1883 248 P---EGLSPeLpprdlrtLQRMGLEIARGLAHLHSHNYVHSDLALRNCLL 294 ds..hvKlaDFGlArql.........ttfvGTpeYmAPEvl......... +s+ +v ++D GlA +++ ++ + + + APE+l++ +++ KIAA1883 295 TSdlTVRIGDYGLAHSNykedyyltpERLWIPLRWAAPELLgelhgtfmv 344 .gYgkpavDiWSlGcilyEllt.GkpPFp...qldlifkkig........ ++ ++ iWSlG++l+El+ G P+++ ++++++ +++ + + + KIAA1883 345 vDQSR-ESNIWSLGVTLWELFEfGAQPYRhlsDEEVLAFVVRqqhvklar 393 .................................................. ++ + ++ +++++ + ++++ +++ ++ ++ +++++++++++ KIAA1883 394 prlklpyadywydilqscwrppaqrpsasdlqlqltyllserpprppppp 443 .................................................. +++++++ ++++++ ++ +++++ +++ + ++ ++ ++++ + +++++ KIAA1883 444 ppprdgpfpwpwppahsaprpgtlsspfplldgfpgadpddvltvtessr 493 .................................................. + + + +++ +++ +++++ + + + + ++ ++ +++++ ++ ++++ KIAA1883 494 glnleclwekarrgagrgggapawqpasappaphanpsnpfyealstpsv 543 .................................................. + + ++++ +++++ + +++++++++ ++++++ +++ + + + + KIAA1883 544 lpvisarspsvsseyyirleehgsppeplfpndwdpldpgvpapqapqap 593 .................................................. ++ + ++++ ++ + +++ + ++ +++ +++++++++ +++ + KIAA1883 594 sevpqlvsetwasplfpaprpfpaqssasgsfllsgwdpegrgagetlag 643 .................................................. ++ + +++++ ++ ++++++++++++++++++ +++++++++ + + + KIAA1883 644 dpaevlgergtapwveeeeeeeegsspgedssslgggpsrrgplpcplcs 693 .................................................. +++ + + ++++ ++++++ + +++++++++ + ++++ + + KIAA1883 694 regacsclplergdavagwgghpalgcphppeddsslraergsladlpma 743 .................................................. ++ + +++ ++ + + ++++++++ +++++++++ + ++ +++++ KIAA1883 744 ppasappefldplmgaaapqypgrgpppapppppppprapadpaaspdpp 793 .................................................. + +++++ +++++++++++++++++ ++++ ++++ ++++ ++++ KIAA1883 794 savaspgsglsspgpkpgdsgyetetpfspegafpgggaaeeegvprpra 843 .................................................. ++++++++ +++++++++ + ++++++++ +++ + +++ +++ KIAA1883 844 ppeppdpgaprpppdpgplplpgprekptfvvqvsteqllmslredvtrn 893 .................................................. ++++ + +++++++ +++++++++ ++ +++++ ++++ ++ + + KIAA1883 894 llgekgataretgprkagrgpgnrekvpglnrdptvlgngkqapslslpv 943 .................................................. ++ + ++++ + ++ +++ +++ ++++++++ ++++ ++++++++ KIAA1883 944 ngvtvlengdqrapgieekaaengalgspereekvlengeltpprreeka 993 .................................................. ++++ ++++ +++ +++ ++++++++ +++++ + ++++++++++++ KIAA1883 994 lengelrspeagekvlvnggltppksedkvsengglrfprnterppetgp 1043 .................................................. ++ +++++++++++++ ++ +++ ++++ ++ + ++ ++++++++ ++ KIAA1883 1044 wrapgpwektpeswgpaptigepapetslerapapsavvssrnggetapg 1093 .................................................. + ++ +++++ +++++++ +++++ ++ ++ ++ + +++++ + ++++ + KIAA1883 1094 plgpapkngtlepgterrapetggaprapgagrldlgsggrapvgtgtap 1143 .................................................. +++++++ + + ++ +++++ +++++ +++++ +++ ++ +++ +++ KIAA1883 1144 gggpgsgvdakagwvdntrpqppppplppppeaqprrlepapprarpeva 1193 .................................................. ++++++ ++++ ++++ +++++++++++++++ ++ + +++ ++++ KIAA1883 1194 pegepgapdsraggdtalsgdgdppkperkgpemprlfldlgppqgnseq 1243 .................................................. + + ++ + ++ + ++ ++++++++++++ + + +++ ++ + +++ KIAA1883 1244 ikarlsrlslalppltltpfpgpgprrppwegadagaaggeaggagapgp 1293 .............................................Speak ++++++++++++++++ ++ +++++++ + + + ++ + +a KIAA1883 1294 aeedgedededeeedeeaaapgaaagprgpgraraapvpvvvssaDADAA 1343 dLikklLvkdPekRlta.eaLedeldikaHPff<-* +++lL+ P+ +a+e +el+ k + KIAA1883 1344 RPLRGLLK-SPR---GAdEPEDSELERK-RKMV 1371 //