hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-15144415/chunk_1/iprscan-20080502-15144415.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1874 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 353.7 2.7e-103 10 PF00096.16.fs Zinc finger, C2H2 type 334.1 2.3e-97 10 PF01352.17.fs KRAB box 74.1 2.2e-20 1 PF01352.17.ls KRAB box 76.0 1.1e-19 1 PF01096.9.fs Transcription factor S-II (TFIIS) 50.9 4.7e-15 9 PF01286.9.fs XPA protein N-terminal 46.4 1.8e-12 9 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01352.17.fs 1/1 103 139 .. 1 41 [] 74.1 2.2e-20 PF01352.17.ls 1/1 103 139 .. 1 41 [] 76.0 1.1e-19 PF00096.16.ls 1/10 301 323 .. 1 24 [] 28.6 2e-05 PF00096.16.fs 1/10 301 323 .. 1 24 [] 26.7 2.1e-05 PF00096.16.fs 2/10 329 351 .. 1 24 [] 38.1 2.9e-08 PF00096.16.ls 2/10 329 351 .. 1 24 [] 40.0 7.3e-09 PF00096.16.fs 3/10 356 378 .. 1 24 [] 31.8 1.1e-06 PF00096.16.ls 3/10 356 378 .. 1 24 [] 33.8 5.7e-07 PF00096.16.ls 4/10 384 406 .. 1 24 [] 33.8 5.5e-07 PF00096.16.fs 4/10 384 406 .. 1 24 [] 31.8 1.1e-06 PF00096.16.fs 5/10 412 434 .. 1 24 [] 34.9 1.9e-07 PF00096.16.ls 5/10 412 434 .. 1 24 [] 36.9 6.4e-08 PF00096.16.fs 6/10 440 462 .. 1 24 [] 33.2 5.1e-07 PF00096.16.ls 6/10 440 462 .. 1 24 [] 35.1 2.2e-07 PF00096.16.fs 7/10 468 490 .. 1 24 [] 35.4 1.5e-07 PF00096.16.ls 7/10 468 490 .. 1 24 [] 37.3 4.8e-08 PF00096.16.fs 8/10 496 518 .. 1 24 [] 38.5 2.1e-08 PF00096.16.ls 8/10 496 518 .. 1 24 [] 40.5 5.3e-09 PF00096.16.fs 9/10 524 546 .. 1 24 [] 35.3 1.5e-07 PF00096.16.ls 9/10 524 546 .. 1 24 [] 37.3 4.9e-08 PF00096.16.fs 10/10 552 574 .. 1 24 [] 28.4 8.1e-06 PF00096.16.ls 10/10 552 574 .. 1 24 [] 30.3 6.2e-06 Alignments of top-scoring domains: PF01352.17.fs: domain 1 of 1, from 103 to 139: score 74.1, E = 2.2e-20 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* VtF+DVa+dFt EEW+ LdpaQr dVMlENy+nLvSl KIAA1874 103 VTFKDVAMDFTPEEWGKLDPAQR----DVMLENYRNLVSLW 139 PF01352.17.ls: domain 1 of 1, from 103 to 139: score 76.0, E = 1.1e-19 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* VtF+DVa+dFt EEW+ LdpaQr dVMlENy+nLvSl KIAA1874 103 VTFKDVAMDFTPEEWGKLDPAQR----DVMLENYRNLVSLW 139 PF00096.16.ls: domain 1 of 10, from 301 to 323: score 28.6, E = 2e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ dCg+ F+ +s L rH+r+H KIAA1874 301 HKCN-DCGELFTYHSVLIRHQRVH 323 PF00096.16.fs: domain 1 of 10, from 301 to 323: score 26.7, E = 2.1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ dCg+ F+ +s L rH+r+H KIAA1874 301 HKCN-DCGELFTYHSVLIRHQRVH 323 PF00096.16.fs: domain 2 of 10, from 329 to 351: score 38.1, E = 2.9e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +CgksFs+++nL++H+rtH KIAA1874 329 YTCN-ECGKSFSHRANLTKHQRTH 351 PF00096.16.ls: domain 2 of 10, from 329 to 351: score 40.0, E = 7.3e-09 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +CgksFs+++nL++H+rtH KIAA1874 329 YTCN-ECGKSFSHRANLTKHQRTH 351 PF00096.16.fs: domain 3 of 10, from 356 to 378: score 31.8, E = 1.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +C+k+F+ +s+L +H+r+H KIAA1874 356 FECS-ECKKTFTESSSLATHQRIH 378 PF00096.16.ls: domain 3 of 10, from 356 to 378: score 33.8, E = 5.7e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +C+k+F+ +s+L +H+r+H KIAA1874 356 FECS-ECKKTFTESSSLATHQRIH 378 PF00096.16.ls: domain 4 of 10, from 384 to 406: score 33.8, E = 5.5e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk F+r+ +L +H+ +H KIAA1874 384 YECN-ECGKGFNRSTHLVQHQLIH 406 PF00096.16.fs: domain 4 of 10, from 384 to 406: score 31.8, E = 1.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk F+r+ +L +H+ +H KIAA1874 384 YECN-ECGKGFNRSTHLVQHQLIH 406 PF00096.16.fs: domain 5 of 10, from 412 to 434: score 34.9, E = 1.9e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +C+k+F ++s L +H+rtH KIAA1874 412 YECN-ECDKAFIHSSALIKHQRTH 434 PF00096.16.ls: domain 5 of 10, from 412 to 434: score 36.9, E = 6.4e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +C+k+F ++s L +H+rtH KIAA1874 412 YECN-ECDKAFIHSSALIKHQRTH 434 PF00096.16.fs: domain 6 of 10, from 440 to 462: score 33.2, E = 5.1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fs+ s+L++H+r+H KIAA1874 440 YKCQ-ECGKAFSHCSSLTKHQRVH 462 PF00096.16.ls: domain 6 of 10, from 440 to 462: score 35.1, E = 2.2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fs+ s+L++H+r+H KIAA1874 440 YKCQ-ECGKAFSHCSSLTKHQRVH 462 PF00096.16.fs: domain 7 of 10, from 468 to 490: score 35.4, E = 1.5e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs++ +L +H+r+H KIAA1874 468 YECS-ECGKTFSQSTHLVQHQRIH 490 PF00096.16.ls: domain 7 of 10, from 468 to 490: score 37.3, E = 4.8e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs++ +L +H+r+H KIAA1874 468 YECS-ECGKTFSQSTHLVQHQRIH 490 PF00096.16.fs: domain 8 of 10, from 496 to 518: score 38.5, E = 2.1e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fsr+sn+ +H+r+H KIAA1874 496 YECN-ECGKTFSRSSNFAKHQRIH 518 PF00096.16.ls: domain 8 of 10, from 496 to 518: score 40.5, E = 5.3e-09 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fsr+sn+ +H+r+H KIAA1874 496 YECN-ECGKTFSRSSNFAKHQRIH 518 PF00096.16.fs: domain 9 of 10, from 524 to 546: score 35.3, E = 1.5e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F ++s L +H+rtH KIAA1874 524 YKCS-ECGKAFIHSSALIQHQRTH 546 PF00096.16.ls: domain 9 of 10, from 524 to 546: score 37.3, E = 4.9e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F ++s L +H+rtH KIAA1874 524 YKCS-ECGKAFIHSSALIQHQRTH 546 PF00096.16.fs: domain 10 of 10, from 552 to 574: score 28.4, E = 8.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +CgksF+ +s+L rH+r+H KIAA1874 552 FRCN-ECGKSFKCSSSLIRHQRVH 574 PF00096.16.ls: domain 10 of 10, from 552 to 574: score 30.3, E = 6.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +CgksF+ +s+L rH+r+H KIAA1874 552 FRCN-ECGKSFKCSSSLIRHQRVH 574 //