# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hj05518.fasta.huge -Q ../query/KIAA1872.ptfa ./tmplib.25089 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1872, 434 aa
 vs ./tmplib.25089 library

1987071 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 4.8256+/-0.00518; mu= 15.2172+/- 0.354
 mean_var=93.9610+/-21.625, 0's: 0 Z-trim: 1  B-trim: 0 in 0/40
 Lambda= 0.132312

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0367  ( 820 res)   hh00141s1                   ( 820) 1004 201.8 1.3e-52


>>KIAA0367  ( 820 res)   hh00141s1                        (820 aa)
 initn: 1249 init1: 962 opt: 1004  Z-score: 1036.7  bits: 201.8 E(): 1.3e-52
Smith-Waterman score: 1275;  61.587% identity (82.540% similar) in 315 aa overlap (85-399:494-795)

           60        70        80        90       100       110    
KIAA18 SSQCLFPAPMGTTEATLRMENVDVKEEWQDEDLPRPLPEETGVELLGSPVEDTSSPPNTL
                                     ::.   .: : :: :  : ..    :::.:
KIAA03 KNMISDTEMEEETEFLELGTRISRPNGLLSEDVGMDIPFEEGV-LSPSAADMRPEPPNSL
           470       480       490       500        510       520  

          120       130       140       150       160       170    
KIAA18 NFNGAHRKRKTLVAPEINISLDQSEGSLLSDDFLDTPDDLDINVDDIETPDETDSLEFLG
       ..: .: .:  :.::.::.::::::::.:::: ::.::..:::::...::::.::.:. :
KIAA03 DLNDTHPRRIKLTAPNINLSLDQSEGSILSDDNLDSPDEIDINVDELDTPDEADSFEYTG
            530       540       550       560       570       580  

          180       190       200       210       220       230    
KIAA18 NGNELEWEDDTPVATAKNMPGDSADLFGDGTTEDGSAANGRLWRTVIIGEQEHRIDLHMI
       .      ::  :  ::..  :. .. . . :.:.    : ::::::.:::::.:::...:
KIAA03 H------ED--P--TANKDSGQESESIPEYTAEEEREDN-RLWRTVVIGEQEQRIDMKVI
                      590       600       610        620       630 

          240       250       260       270       280       290    
KIAA18 RPYMKVVTHGGYYGEGLNAIIVFAACFLPDSSLPDYHYIMENLFLYVISSLELLVAEDYM
       .:: .:..::::::.:::::::::::::::::  ::::.::::::::::.:::.::::::
KIAA03 EPYRRVISHGGYYGDGLNAIIVFAACFLPDSSRADYHYVMENLFLYVISTLELMVAEDYM
             640       650       660       670       680       690 

          300       310       320       330       340       350    
KIAA18 IVYLNGATPRRRMPGIGWLKKCYQMIDRRLRKNLKSLIIVHPSWFIRTVLAISRPFISVK
       :::::::::::::::.::.:::::::::::::::::.:::::::::::.::..::::: :
KIAA03 IVYLNGATPRRRMPGLGWMKKCYQMIDRRLRKNLKSFIIVHPSWFIRTILAVTRPFISSK
             700       710       720       730       740       750 

          360       370       380       390       400       410    
KIAA18 FINKIQYVHSLEDLEQLIPMEHVQIPDCVLQYEEERLKARRESARPQPEFVLPRSEEKPE
       : .::.::.:: .:  ::::. ..::. ... .:: :.   :.:.               
KIAA03 FSSKIKYVNSLSELSGLIPMDCIHIPESIIKLDEE-LREASEAAKTSCLYNDPEMSSMEK
             760       770       780        790       800       810

          420       430    
KIAA18 VAPVENRSALVSEDQETSMS
                           
KIAA03 DIDLKLKEKP          
              820          




434 residues in 1 query   sequences
1987071 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:20:16 2008 done: Thu Dec 18 15:20:16 2008
 Total Scan time:  0.420 Total Display time:  0.010

Function used was FASTA [version 34.26.5 April 26, 2007]