hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-15093614/chunk_1/iprscan-20080502-15093614.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1871 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00355 551.1 4.4e-161 22 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00355 1/22 113 135 .. 1 23 [] 0.8 2.6e+02 SM00355 2/22 141 163 .. 1 23 [] 29.6 0.00044 SM00355 3/22 169 191 .. 1 23 [] 25.0 0.01 SM00355 4/22 197 219 .. 1 23 [] 28.5 0.00091 SM00355 5/22 225 247 .. 1 23 [] 29.2 0.00055 SM00355 6/22 253 275 .. 1 23 [] 25.4 0.0082 SM00355 7/22 281 303 .. 1 23 [] 19.8 0.38 SM00355 8/22 309 331 .. 1 23 [] 24.5 0.015 SM00355 9/22 337 359 .. 1 23 [] 27.3 0.0022 SM00355 10/22 390 412 .. 1 23 [] 16.7 3.3 SM00355 11/22 418 440 .. 1 23 [] 30.9 0.00018 SM00355 12/22 446 468 .. 1 23 [] 24.6 0.014 SM00355 13/22 474 496 .. 1 23 [] 31.3 0.00013 SM00355 14/22 502 524 .. 1 23 [] 31.2 0.00014 SM00355 15/22 530 552 .. 1 23 [] 25.1 0.0096 SM00355 16/22 582 604 .. 1 23 [] 19.1 0.64 SM00355 17/22 610 632 .. 1 23 [] 30.9 0.00018 SM00355 18/22 638 660 .. 1 23 [] 29.4 0.0005 SM00355 19/22 666 688 .. 1 23 [] 31.0 0.00017 SM00355 20/22 694 716 .. 1 23 [] 27.0 0.0026 SM00355 21/22 722 744 .. 1 23 [] 25.2 0.0092 SM00355 22/22 775 797 .. 1 23 [] 18.8 0.78 Alignments of top-scoring domains: SM00355: domain 1 of 22, from 113 to 135: score 0.8, E = 2.6e+02 *->ykCpigCgksfssk.aLkrHmrvH<-* ++ ++ g+ f++k+ L++H+++H KIAA1871 113 HRYEV-SGQNFKQKsGLTEHQKIH 135 SM00355: domain 2 of 22, from 141 to 163: score 29.6, E = 0.00044 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ C k+f++ ++L+ H+r+H KIAA1871 141 YECKE-CEKTFNRSsNLIIHQRIH 163 SM00355: domain 3 of 22, from 169 to 191: score 25.0, E = 0.01 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk ++ ++L+ H+r+H KIAA1871 169 YVCNE-CGKDSNQSsNLIIHQRIH 191 SM00355: domain 4 of 22, from 197 to 219: score 28.5, E = 0.00091 *->ykCpigCgksfssk.aLkrHmrvH<-* y C++ Cgk f++ ++L+rH ++H KIAA1871 197 YICHE-CGKDFNQSsNLVRHKQIH 219 SM00355: domain 5 of 22, from 225 to 247: score 29.2, E = 0.00055 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk f+ ++L+ H+r+H KIAA1871 225 YECKE-CGKAFKGSsNLVLHQRIH 247 SM00355: domain 6 of 22, from 253 to 275: score 25.4, E = 0.0082 *->ykCpigCgksfssk.aLkrHmrvH<-* y C++ Cgk fs+ ++L+ H r+H KIAA1871 253 YLCNK-CGKAFSQStDLIIHHRIH 275 SM00355: domain 7 of 22, from 281 to 303: score 19.8, E = 0.38 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C Cg+ fs+ ++L+ H+r+H KIAA1871 281 YECYD-CGQMFSQSsHLVPHQRIH 303 SM00355: domain 8 of 22, from 309 to 331: score 24.5, E = 0.015 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC++ C k f+++++L++H+r H KIAA1871 309 LKCNE-CEKAFRQHsHLTEHQRLH 331 SM00355: domain 9 of 22, from 337 to 359: score 27.3, E = 0.0022 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C+ Cgk+fs ++a+ +H+r H KIAA1871 337 YECHR-CGKTFSGRtAFLKHQRLH 359 SM00355: domain 10 of 22, from 390 to 412: score 16.7, E = 3.3 *->ykCpigCgksfssk.aLkrHmrvH<-* y C++ Cg+ f ++L+rH+ +H KIAA1871 390 YWCNQ-CGRNFQGTsDLIRHQVTH 412 SM00355: domain 11 of 22, from 418 to 440: score 30.9, E = 0.00018 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk+f++ ++L rH r+H KIAA1871 418 YECKE-CGKTFNQSsDLLRHHRIH 440 SM00355: domain 12 of 22, from 446 to 468: score 24.6, E = 0.014 *->ykCpigCgksfssk.aLkrHmrvH<-* +C++ Cgksf+ ++L+rH rvH KIAA1871 446 CVCSK-CGKSFRGSsDLIRHHRVH 468 SM00355: domain 13 of 22, from 474 to 496: score 31.3, E = 0.00013 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk fs++++L+ H+++H KIAA1871 474 YECSE-CGKAFSQRsHLVTHQKIH 496 SM00355: domain 14 of 22, from 502 to 524: score 31.2, E = 0.00014 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk f++++ L++H r+H KIAA1871 502 YQCTE-CGKAFRRRsLLIQHRRIH 524 SM00355: domain 15 of 22, from 530 to 552: score 25.1, E = 0.0096 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk f +++a+ +H+ H KIAA1871 530 YECKE-CGKLFIWRtAFLKHQSLH 552 SM00355: domain 16 of 22, from 582 to 604: score 19.1, E = 0.64 *->ykCpigCgksfssk.aLkrHmrvH<-* y C++ Cg+ f ++L+rH+ +H KIAA1871 582 YWCNQ-CGRAFQGSsDLIRHQVTH 604 SM00355: domain 17 of 22, from 610 to 632: score 30.9, E = 0.00018 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk+f++ ++L rH r+H KIAA1871 610 YECKE-CGKTFNQSsDLLRHHRIH 632 SM00355: domain 18 of 22, from 638 to 660: score 29.4, E = 0.0005 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgksf+ ++L++H r+H KIAA1871 638 YVCNK-CGKSFRGSsDLIKHHRIH 660 SM00355: domain 19 of 22, from 666 to 688: score 31.0, E = 0.00017 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk fs++++L H+++H KIAA1871 666 YECSE-CGKAFSQRsHLATHQKIH 688 SM00355: domain 20 of 22, from 694 to 716: score 27.0, E = 0.0026 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cg f++++ L++H r H KIAA1871 694 YQCSE-CGNAFRRRsLLIQHRRLH 716 SM00355: domain 21 of 22, from 722 to 744: score 25.2, E = 0.0092 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk f +++a+ +H+r H KIAA1871 722 YECKE-CGKLFMWHtAFLKHQRLH 744 SM00355: domain 22 of 22, from 775 to 797: score 18.8, E = 0.78 *->ykCpigCgksfssk.aLkrHmrvH<-* y C++ C+++f ++L+rH+ +H KIAA1871 775 YWCNQ-CSRTFQGSsDLIRHQVTH 797 //