hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-14493669/chunk_1/iprscan-20080502-14493669.nocrc
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Query sequence: KIAA1859
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01454.9.ls MAGE family                                    322.9      5e-94   1
PF01454.9.fs MAGE family                                    321.1    1.8e-93   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01454.9.fs   1/1     440   609 ..     1   219 []   321.1  1.8e-93
PF01454.9.ls   1/1     440   609 ..     1   219 []   322.9    5e-94

Alignments of top-scoring domains:
PF01454.9.fs: domain 1 of 1, from 440 to 609: score 321.1, E = 1.8e-93
                   *->LVrflLskyqsKespItraeilkiVikeyknhFLpeIfkrAserLel
                      LV++l++k+++K+ pI+ra++lk+Vi+ey +hF peI++rA ++Le+
    KIAA1859   440    LVKYLMIKDYKKI-PIKRADMLKDVIREYDEHF-PEIIERATYTLEK 484  

                   vFGleLkEvdpkrrskkatsqsqsssgshsYILvskLplsyrivlflwqs
                    FG+ LkE+d+                 h YILv + + s          
    KIAA1859   485 KFGIHLKEIDKE---------------EHLYILVCTRDSS---------- 509  

                   sykdgselgddeglPktsesstdtdqlavktGLLmviLgvIfmnGncasE
                       +  lg+++++P              ++ LL+viLgvIfmnGn+asE
    KIAA1859   510 ---ARL-LGKTKDTP--------------RLSLLLVILGVIFMNGNRASE 541  

                   eeLwefLnrlGlydgeehfifGldprkLitedlVkqkYLveyrqvpnsdP
                   ++Lwe L+++Gl++g +h+ +G d+rkLit d+VkqkYL ey+++pns+P
    KIAA1859   542 AVLWEALRKMGLRPGVRHPFLG-DLRKLITDDFVKQKYL-EYKKIPNSNP 589  

                   peyeFlWslGpRAyaEtskmkV<-*
                   peyeFlW  G RA +Etskm V   
    KIAA1859   590 PEYEFLW--GLRARHETSKMRV    609  

PF01454.9.ls: domain 1 of 1, from 440 to 609: score 322.9, E = 5e-94
                   *->LVrflLskyqsKespItraeilkiVikeyknhFLpeIfkrAserLel
                      LV++l++k+++K+ pI+ra++lk+Vi+ey +hF peI++rA ++Le+
    KIAA1859   440    LVKYLMIKDYKKI-PIKRADMLKDVIREYDEHF-PEIIERATYTLEK 484  

                   vFGleLkEvdpkrrskkatsqsqsssgshsYILvskLplsyrivlflwqs
                    FG+ LkE+d+                 h YILv + + s          
    KIAA1859   485 KFGIHLKEIDKE---------------EHLYILVCTRDSS---------- 509  

                   sykdgselgddeglPktsesstdtdqlavktGLLmviLgvIfmnGncasE
                       +  lg+++++P              ++ LL+viLgvIfmnGn+asE
    KIAA1859   510 ---ARL-LGKTKDTP--------------RLSLLLVILGVIFMNGNRASE 541  

                   eeLwefLnrlGlydgeehfifGldprkLitedlVkqkYLveyrqvpnsdP
                   ++Lwe L+++Gl++g +h+ +G d+rkLit d+VkqkYL ey+++pns+P
    KIAA1859   542 AVLWEALRKMGLRPGVRHPFLG-DLRKLITDDFVKQKYL-EYKKIPNSNP 589  

                   peyeFlWslGpRAyaEtskmkV<-*
                   peyeFlW  G RA +Etskm V   
    KIAA1859   590 PEYEFLW--GLRARHETSKMRV    609  

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