hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-14021316/chunk_1/iprscan-20080502-14021316.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1831 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02493.10.ls MORN repeat 177.2 3.8e-50 8 PF02493.10.fs MORN repeat 163.0 7e-46 8 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02493.10.fs 1/8 50 68 .. 1 19 [. 18.0 0.00075 PF02493.10.ls 1/8 50 72 .. 1 23 [] 16.8 0.032 PF02493.10.ls 2/8 74 95 .. 1 23 [] 11.1 0.21 PF02493.10.ls 3/8 96 117 .. 1 23 [] 18.1 0.021 PF02493.10.fs 3/8 96 112 .. 1 17 [. 15.3 0.0042 PF02493.10.ls 4/8 118 140 .. 1 23 [] 15.3 0.052 PF02493.10.fs 4/8 118 140 .. 1 23 [] 13.3 0.015 PF02493.10.ls 5/8 141 163 .. 1 23 [] 28.6 2e-05 PF02493.10.fs 5/8 141 163 .. 1 23 [] 26.6 3.1e-06 PF02493.10.ls 6/8 164 186 .. 1 23 [] 23.4 0.00078 PF02493.10.fs 6/8 164 178 .. 1 15 [. 20.7 0.00013 PF02493.10.ls 7/8 317 339 .. 1 23 [] 26.9 6.8e-05 PF02493.10.fs 7/8 317 339 .. 1 23 [] 24.9 9.5e-06 PF02493.10.ls 8/8 340 362 .. 1 23 [] 37.1 5.8e-08 PF02493.10.fs 8/8 340 362 .. 1 23 [] 35.1 1.4e-08 Alignments of top-scoring domains: PF02493.10.fs: domain 1 of 8, from 50 to 68: score 18.0, E = 0.00075 *->YeGewknGkrhGkGvytwa<-* Y+G w G+ hG+Gv+t + KIAA1831 50 YVGGWEAGRAHGYGVCTGP 68 PF02493.10.ls: domain 1 of 8, from 50 to 72: score 16.8, E = 0.032 *->YeGewknGkrhGkGvytwadGdr<-* Y+G w G+ hG+Gv+t + KIAA1831 50 YVGGWEAGRAHGYGVCTGPGAQG 72 PF02493.10.ls: domain 2 of 8, from 74 to 95: score 11.1, E = 0.21 *->YeGewknGkrhGkGvytwadGdr<-* Y G w +G + Gv+t + G KIAA1831 74 YSGCWAHGFES-LGVFTGPGGHS 95 PF02493.10.ls: domain 3 of 8, from 96 to 117: score 18.1, E = 0.021 *->YeGewknGkrhGkGvytwadGdr<-* Y+G+w++Gkr+G Gv ++ ++ KIAA1831 96 YQGHWQQGKREGLGVE-RKSRWT 117 PF02493.10.fs: domain 3 of 8, from 96 to 112: score 15.3, E = 0.0042 *->YeGewknGkrhGkGvyt<-* Y+G+w++Gkr+G Gv + KIAA1831 96 YQGHWQQGKREGLGVER 112 PF02493.10.ls: domain 4 of 8, from 118 to 140: score 15.3, E = 0.052 *->YeGewknGkrhGkGvytwadGdr<-* Y Gew +G++ +Gv +G r KIAA1831 118 YRGEWLGGLKGRSGVWESVSGLR 140 PF02493.10.fs: domain 4 of 8, from 118 to 140: score 13.3, E = 0.015 *->YeGewknGkrhGkGvytwadGdr<-* Y Gew +G++ +Gv +G r KIAA1831 118 YRGEWLGGLKGRSGVWESVSGLR 140 PF02493.10.ls: domain 5 of 8, from 141 to 163: score 28.6, E = 2e-05 *->YeGewknGkrhGkGvytwadGdr<-* Y G wk+G +G+G+ t++dG++ KIAA1831 141 YAGLWKDGFQDGYGTETYSDGGT 163 PF02493.10.fs: domain 5 of 8, from 141 to 163: score 26.6, E = 3.1e-06 *->YeGewknGkrhGkGvytwadGdr<-* Y G wk+G +G+G+ t++dG++ KIAA1831 141 YAGLWKDGFQDGYGTETYSDGGT 163 PF02493.10.ls: domain 6 of 8, from 164 to 186: score 23.4, E = 0.00078 *->YeGewknGkrhGkGvytwadGdr<-* Y+G+w+ GkrhG+Gv + KIAA1831 164 YQGQWQAGKRHGYGVRQSVPYHQ 186 PF02493.10.fs: domain 6 of 8, from 164 to 178: score 20.7, E = 0.00013 *->YeGewknGkrhGkGv<-* Y+G+w+ GkrhG+Gv KIAA1831 164 YQGQWQAGKRHGYGV 178 PF02493.10.ls: domain 7 of 8, from 317 to 339: score 26.9, E = 6.8e-05 *->YeGewknGkrhGkGvytwadGdr<-* Y Gew+ ++r+G+Gv + ++G r KIAA1831 317 YAGEWRADRRSGFGVSQRSNGLR 339 PF02493.10.fs: domain 7 of 8, from 317 to 339: score 24.9, E = 9.5e-06 *->YeGewknGkrhGkGvytwadGdr<-* Y Gew+ ++r+G+Gv + ++G r KIAA1831 317 YAGEWRADRRSGFGVSQRSNGLR 339 PF02493.10.ls: domain 8 of 8, from 340 to 362: score 37.1, E = 5.8e-08 *->YeGewknGkrhGkGvytwadGdr<-* YeGew +++rhG+G+ t +dG+r KIAA1831 340 YEGEWLGNRRHGYGRTTRPDGSR 362 PF02493.10.fs: domain 8 of 8, from 340 to 362: score 35.1, E = 1.4e-08 *->YeGewknGkrhGkGvytwadGdr<-* YeGew +++rhG+G+ t +dG+r KIAA1831 340 YEGEWLGNRRHGYGRTTRPDGSR 362 //