# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/ha06249.fasta.huge -Q ../query/KIAA1828.ptfa ./tmplib.25089 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1828, 496 aa vs ./tmplib.25089 library 1987009 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 6.4333+/-0.00697; mu= 9.2731+/- 0.472 mean_var=183.0703+/-44.636, 0's: 0 Z-trim: 5 B-trim: 16 in 1/39 Lambda= 0.094791 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1531 ( 1206 res) ph00937 (1206) 444 73.2 1.1e-13 KIAA0550 ( 1524 res) hh15909 (1524) 192 38.9 0.003 >>KIAA1531 ( 1206 res) ph00937 (1206 aa) initn: 757 init1: 287 opt: 444 Z-score: 337.6 bits: 73.2 E(): 1.1e-13 Smith-Waterman score: 889; 39.006% identity (58.317% similar) in 523 aa overlap (22-496:706-1206) 10 20 30 40 50 KIAA18 EHPGVTPLRTSPPLPWWTPIQVGIVLHYSTLSTMLWIGVTARNIYKQVTKK :::.::::.:::.::.:: :: ..:..: . KIAA15 LLNLCFHIAMTSAVFAGGITLTNYQMVCQAVGITLHYSSLSTLLWMGVKARVLHKELTWR 680 690 700 710 720 730 60 70 80 90 100 110 KIAA18 APLCLDTDQPPYPR-QPLLRFYLVSGGVPFIICGVTAATNIRNYGTEDEDTAYCWMAWEP :: . : : : .:.:::::..::.:.::::.:::.::.:: . . :::..:.: KIAA15 APPPQEGD-PALPTPSPMLRFYLIAGGIPLIICGITAAVNIHNY---RDHSPYCWLVWRP 740 750 760 770 780 790 120 130 140 150 KIAA18 SLGAFYGPAAIITLVTCVYFLGTYVQLR----RHP--GRRYELRTQPEEQR-----RLAT :::::: :.:.: :.: .::: . ..:: ..: : :: : : . KIAA15 SLGAFYIPVALILLITWIYFLCAGLRLRGPLAQNPKAGNSRASLEAGEELRGSTRLRGSG 800 810 820 830 840 850 160 170 180 190 200 210 KIAA18 P---EGGR-----GIRPGTP-PAHDAPGASVLQNEHSFQAQLRAAAFTLFLFTATWAFGA : ..: . : ::: : .: : :. .: .:: : . : ::. : :: :: KIAA15 PLLSDSGSLLATGSARVGTPGPPED--GDSL----YSPGVQLGALVTTHFLYLAMWACGA 860 870 880 890 900 220 230 240 250 260 270 KIAA18 LAVSQGHFLDMVFSCLYGAFCVTLGLFVLIHHCAKREDVWQCWWACCPPRKDAHPALDAN ::::: . .: :::::. .:::::. ::::.:.:: : ::::: . : : : KIAA15 LAVSQRWLPRVVCSCLYGVAASALGLFVFTHHCARRRDVRASWRACCPPASPAAP--HAP 910 920 930 940 950 960 280 290 300 310 KIAA18 GAALGRAACLHSPGLGQ--------PRGFAHPP---GPCKMTNLQAAQGHASCLSPATPC :: :: :: .:. : : . : ::::.:::: ::... : . :. KIAA15 PRALPAAAEDGSPVFGEGPPSLKSSPSGSSGHPLALGPCKLTNLQLAQSQV-CEAGAA-- 970 980 990 1000 1010 1020 320 330 340 350 360 370 KIAA18 CAKMHCEPLTA----DEAHVHLQE--EGAFGHDPHLHGCLQGRTKPPYFSRHPAEEPEYA : . :: : . :: : .. .: .: . .: :.. . : KIAA15 -AGGEGEPEPAGTRGNLAHRHPNNVHHGRRAHKSRAKGHRAGEACGKNRLKALRGGAAGA 1030 1040 1050 1060 1070 380 390 400 410 420 430 KIAA18 YHIPSSLDGSPRSSRTDSP-PSSLDGPAGTHTLACCTQGDPFPMVTQPEGSDGSPALYSC .. :: .:. ..: ::: :: ..:.. : .:. ::.: :::: : : : KIAA15 LELLSSESGGLHNSPTDSYLGSSRNSPGAGLQL----EGE--PMLTPSEGSDTSAAPLSE 1080 1090 1100 1110 1120 1130 440 450 460 470 480 KIAA18 PTQPG------REAALGPGHLEMLRRTQSLPFGGPSQNGLPKGKLLEGLPF-GTD--GTG . : :.. : : :: . .: :... : :: ::: . . . :.. . : KIAA15 AGRAGQRRSASRDSLKGGGALEKESHRRSYPLNAASLNGAPKGGKYDDVTLMGAEVASGG 1140 1150 1160 1170 1180 1190 490 KIAA18 NIRTGPWKNETTV ..:: ::.:::: KIAA15 CMKTGLWKSETTV 1200 >>KIAA0550 ( 1524 res) hh15909 (1524 aa) initn: 114 init1: 56 opt: 192 Z-score: 150.2 bits: 38.9 E(): 0.003 Smith-Waterman score: 207; 22.635% identity (54.730% similar) in 296 aa overlap (26-311:950-1222) 10 20 30 40 50 KIAA18 EHPGVTPLRTSPPLPWWTPIQVGIVLHYSTLSTMLWIGVTARNIYKQVTKKAPLC ::. :... :. . : . : :: : KIAA05 CLSIISSNILILVGQTQTHNKSICTTTTAFLHFFFLASFCWVLTEAWQSYMAVTGKI--- 920 930 940 950 960 970 60 70 80 90 100 110 KIAA18 LDTDQPPYPRQPLLRFYLVSGGVPFIICGVTAA-TNIRNYGTEDEDTAYCWMAWEPSL-G : :: .. :.: .. ..... : ..:::. :::.. : .: KIAA05 -------RTRLIRKRFLCLGWGLPALVVATSVGFTRTKGYGTDH----YCWLSLEGGLLY 980 990 1000 1010 1020 120 130 140 150 160 170 KIAA18 AFYGPAAIITLVTCVYFLGTYVQLRRHPGRRYELRTQPEEQR--RLATPEGGRGIRPGTP :: :::: ..::. : . .. .: . : . . ..: ... :..: .. . KIAA05 AFVGPAAAVVLVNMVIGILVFNKLVSRDG----ILDKKLKHRAGQMSEPHSGLTLKCAKC 1030 1040 1050 1060 1070 1080 180 190 200 210 220 230 KIAA18 PAHDAPGASVLQNEHSFQAQLRAAAFTLFLFTATWAFGALAVSQGHFLDMVFSCLYGAFC . .. . :. ... :.: .. .: :.. :: ..::... . ...:. :...: KIAA05 GVVSTTALSATTASNAM-ASLWSSCVVLPLLALTWMSAVLAMTDKR--SILFQILFAVFD 1090 1100 1110 1120 1130 240 250 260 270 280 KIAA18 VTLGLFVLIHHCAKR---EDVWQCWWACC--PPRKDAHPALDANGAALGRAACLHSPGLG :. ... :: : .:...: : : :. .. :: : . .. .. KIAA05 SLQGFVIVMVHCILRREVQDAFRCRLRNCQDPINADSSSSFP-NGHAQIMTDFEKDVDIA 1140 1150 1160 1170 1180 1190 290 300 310 320 330 340 KIAA18 QPRGFAHPP-GPCKMTNLQAAQGHASCLSPATPCCAKMHCEPLTADEAHVHLQEEGAFGH :. : :::. ... .. .. : KIAA05 C-RSVLHKDIGPCRAATITGTLSRISLNDDEEEKGTNPEGLSYSTLPGNVISKVIIQQPT 1200 1210 1220 1230 1240 1250 496 residues in 1 query sequences 1987009 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:18:36 2008 done: Thu Dec 18 15:18:36 2008 Total Scan time: 0.440 Total Display time: 0.040 Function used was FASTA [version 34.26.5 April 26, 2007]