hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-13502223/chunk_1/iprscan-20080502-13502223.nocrc
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Query sequence: KIAA1824
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00320                                                 142.9    3.4e-38   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00320    1/6      58    98 ..     1    46 []    32.5  5.9e-05
SM00320    2/6     106   145 ..     1    46 []    23.3    0.035
SM00320    3/6     148   187 ..     1    46 []    37.2  2.2e-06
SM00320    4/6     195   232 ..     1    46 []     6.5       46
SM00320    5/6     280   324 ..     1    46 []    13.5      3.5
SM00320    6/6     338   377 ..     1    46 []    29.9  0.00036

Alignments of top-scoring domains:
SM00320: domain 1 of 6, from 58 to 98: score 32.5, E = 5.9e-05
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                       +   + l gH g   V+++ fs +g     +++l+sg++D+ + lW
    KIAA1824    58    RnLYKKDLLGHFG--CVNAIEFSNNG-----GQWLVSGGdDRRVLLW 97   

                   d<-*
                   +   
    KIAA1824    98 H    98   

SM00320: domain 2 of 6, from 106 to 145: score 23.3, E = 0.035
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                        k+++    H +   + ++af++ +      + ++sg++D ++ l 
    KIAA1824   106    RvKPIQLKGEHHS--NIFCLAFNSGN------TKVFSGGnDEQVILH 144  

                   d<-*
                   d   
    KIAA1824   145 D    145  

SM00320: domain 3 of 6, from 148 to 187: score 37.2, E = 2.2e-06
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      +++ l ++  H++  +V+++++sp +     +n++as+s+Dg + +W
    KIAA1824   148    SsETLDVFA-HED--AVYGLSVSPVN-----DNIFASSSdDGRVLIW 186  

                   d<-*
                   d   
    KIAA1824   187 D    187  

SM00320: domain 4 of 6, from 195 to 232: score 6.5, E = 46
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++ +l+ ++   +  + +sv f+p       p+lla++ +   + lW
    KIAA1824   195    EpFCLANYP---S--AFHSVMFNPVE-----PRLLATANsKEGVGLW 231  

                   d<-*
                   d   
    KIAA1824   232 D    232  

SM00320: domain 5 of 6, from 280 to 324: score 13.5, E = 3.5
                   *->t.kllrtlkgHtge...spVtsvafspdggssdspnllasgs.Dgti
                      ++ +++ ++  +g  +++   s++f  d      +++++sgs+D ++
    KIAA1824   280    SrLPVFQFD-NQGYfnsCTMKSCCFAGDR-----DQYILSGSdDFNL 320  

                   rlWd<-*
                   ++W    
    KIAA1824   321 YMWR    324  

SM00320: domain 6 of 6, from 338 to 377: score 29.9, E = 0.00036
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                       +   ++lkgH++   V+ v+f+p+        +++s++  + i++W
    KIAA1824   338    VnGAFMVLKGHRS--IVNQVRFNPHT------YMICSSGvEKIIKIW 376  

                   d<-*
                   +   
    KIAA1824   377 S    377  

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