hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-13502223/chunk_1/iprscan-20080502-13502223.nocrc
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Query sequence: KIAA1824
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00400.22.ls WD domain, G-beta repeat                       125.3    1.6e-34   5
PF00400.22.fs WD domain, G-beta repeat                       117.0    4.9e-32   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00400.22.ls   1/5      59    98 ..     1    38 []    34.3  3.9e-07
PF00400.22.fs   1/5      59    98 ..     1    38 []    32.3  3.9e-08
PF00400.22.fs   2/5     107   145 ..     1    38 []    14.9   0.0032
PF00400.22.ls   3/5     148   187 ..     1    38 []    33.1  9.1e-07
PF00400.22.fs   3/5     148   187 ..     1    38 []    31.1  8.6e-08
PF00400.22.fs   4/5     300   324 ..    14    38 .]    13.2   0.0092
PF00400.22.ls   5/5     339   377 ..     1    38 []    27.5  4.5e-05
PF00400.22.fs   5/5     339   377 ..     1    38 []    25.5  3.2e-06

Alignments of top-scoring domains:
PF00400.22.ls: domain 1 of 5, from 59 to 98: score 34.3, E = 3.9e-07
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                         k+ l gH + V+++ fs ++g++l+sg++D+ + +W+   
    KIAA1824    59    NLYKkDLlGHFGCVNAIEFSNNGGQWLVSGGDDRRVLLWH    98   

PF00400.22.fs: domain 1 of 5, from 59 to 98: score 32.3, E = 3.9e-08
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                         k+ l gH + V+++ fs ++g++l+sg++D+ + +W+   
    KIAA1824    59    NLYKkDLlGHFGCVNAIEFSNNGGQWLVSGGDDRRVLLWH    98   

PF00400.22.fs: domain 2 of 5, from 107 to 145: score 14.9, E = 0.0032
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                       ++++  + H s + c+af+    + ++sg+ D  + + d   
    KIAA1824   107    VKPIqLKgEHHSNIFCLAFNSG-NTKVFSGGNDEQVILHD    145  

PF00400.22.ls: domain 3 of 5, from 148 to 187: score 33.1, E = 9.1e-07
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                         +    +H+++V+ +++sp + +++as+S+Dg + iWd   
    KIAA1824   148    SSETlDVfAHEDAVYGLSVSPVNDNIFASSSDDGRVLIWD    187  

PF00400.22.fs: domain 3 of 5, from 148 to 187: score 31.1, E = 8.6e-08
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                         +    +H+++V+ +++sp + +++as+S+Dg + iWd   
    KIAA1824   148    SSETlDVfAHEDAVYGLSVSPVNDNIFASSSDDGRVLIWD    187  

PF00400.22.fs: domain 4 of 5, from 300 to 324: score 13.2, E = 0.0092
                   *->cvafspdsgpllasgSrDgtikiWd<-*
                      +++f+ d  ++++sgS+D ++++W    
    KIAA1824   300    SCCFAGDRDQYILSGSDDFNLYMWR    324  

PF00400.22.ls: domain 5 of 5, from 339 to 377: score 27.5, E = 4.5e-05
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                           vl+gH s V+ v+f+p+   +++s++  + ikiW+   
    KIAA1824   339    NGAFmVLkGHRSIVNQVRFNPH-TYMICSSGVEKIIKIWS    377  

PF00400.22.fs: domain 5 of 5, from 339 to 377: score 25.5, E = 3.2e-06
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                           vl+gH s V+ v+f+p+   +++s++  + ikiW+   
    KIAA1824   339    NGAFmVLkGHRSIVNQVRFNPH-TYMICSSGVEKIIKIWS    377  

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