# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/ph00952.fasta.huge -Q ../query/KIAA1814.ptfa ./tmplib.25089 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1814, 1285 aa vs ./tmplib.25089 library 1986220 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 15.7613+/-0.0137; mu= -33.3526+/- 0.928 mean_var=798.4491+/-190.727, 0's: 0 Z-trim: 6 B-trim: 5 in 1/39 Lambda= 0.045389 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 40, opt: 28, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1205 ( 1217 res) fg03511a (1217) 339 38.5 0.0084 >>KIAA1205 ( 1217 res) fg03511a (1217 aa) initn: 308 init1: 203 opt: 339 Z-score: 142.1 bits: 38.5 E(): 0.0084 Smith-Waterman score: 400; 23.473% identity (45.030% similar) in 835 aa overlap (492-1266:6-785) 470 480 490 500 510 520 KIAA18 EKQIGANAHGAGSRSLALAPAGFSYAGSVAISGALAGSPASLTPGAEPATLDESSSSGSL . :. : : . : : .: KIAA12 VVMEQLPGVPPGPPHPVRPPPPPPP----PMPLQL 10 20 30 530 540 550 560 570 580 KIAA18 FATVGSRSSTPQHPLLLAQPRNSLPASPAHQLSSSPRLGGAAQGPLPEASKGDLPSDSGF : . :.. : : .:..:: : : .: :: . ::: : :.:.: KIAA12 EAHLRSHGLEPAAPSPRLRPEESLDPPGAMQ-----ELLGALE-PLPPA-----PGDTGV 40 50 60 70 80 590 600 610 620 630 KIAA18 SDPESEAKRRIVFTITTGAGSAKQ-SPSSKHSPLTASARGDCVP-SHGQDSRRR------ . :.::.: ::. .. ::.. ..: . . : : : :: .: KIAA12 GPPNSEGK--------DPAGAYRSPSPQGTKAPRFVPLTSICFPDSLLQDEERSFFPTME 90 100 110 120 130 640 650 660 670 680 KIAA18 -----------GRR-KRASAGTPSLSAGVSPKRRAL-PSVAGLFTQPSGSPLNLNSMVSN :. . : :. .:: : : : . ::. . .. . KIAA12 EMFGGGAADDYGKAGPPEDEGDPKAGAGPPPGPPAYDPYGPYCPGRASGAGPETPGLGLD 140 150 160 170 180 190 690 700 710 720 730 KIAA18 INQPLEI--TAISSPETSLKSSPVPYQDHDQPPVLKKERPLSQTNGAHYSPLTSDEEPGS :.: :. :. . : ..:.: :: : :. .:. ::. . .: . KIAA12 PNKPPELPSTVNAEPLGLIQSGPHQAAPPPPPPPPPPPAPASEPKGGLTSPIFCSTKPKK 200 210 220 230 240 250 740 750 760 770 780 790 KIAA18 EDEPSSARIERKIATISLESKSPPKTLENGGGL-AGRKPAPAGEPVNSSKWKSTFSPISD . :: .. :. ..:: ... : : . : : . ..: KIAA12 LLKTSSFHLLRR--------RDPP--FQTPKKLYAQEYEFEADEDKADVPADIRLNPRRL 260 270 280 290 300 800 810 820 830 840 850 KIAA18 IGLAKSADSPLQASSALSQNSLFTFRPALEEPSADAKLAAHPRKGFPGSLSGADGLSPGT :..: : : : :.. .. :. . : .. .. .. : : . : KIAA12 PDLVSSCRSR-PALSPLGDIDFCPPNPGPDGPRRRGRKPTKAKRDGPPRPRGRPRIRPLE 310 320 330 340 350 360 860 870 880 890 900 910 KIAA18 NPANGCTFGGGLAADLSLHSFSDGASLPHKGPEAAGLS-SPLSFPSQRGKEGSDANPFLS :... ... .: . . . : . .:. ::.: ::. : . :. :. KIAA12 VPTTAGPASASTPTDGAKKPRGRGRGRGRKAEEAGGTRLEPLK-PLKIKLSVPKAGEGLG 370 380 390 400 410 420 920 930 940 950 960 970 KIAA18 KRQLDGLAGLKG---EGSRGKEAGEGGLPLCGPTDKTPLL-SGKAAKARDREVDLKNG-- . :...: ..: .: :. . .: : . :: :. : ::.: KIAA12 TSSGDAISGTDHNSLDSSLTREKIEAKIKEV--EEKQPEMKSGFMASFLDF---LKSGKR 430 440 450 460 470 980 990 1000 1010 1020 1030 KIAA18 HNLFISAAAVPPGSLLSGPGLAPAASSAGGAASSAQTHRSFLGPFPPGPQFALGPMSLQA : . .:. .:: :: : .: . : : . . . : ::. :.:: .:.: KIAA12 HPPLYQAGLTPP---LSPPKSVPPSVPARGLQPQPPATPAVPHP-PPSGAFGLGG-ALEA 480 490 500 510 520 530 1040 1050 1060 1070 1080 KIAA18 ----NLGSVAGSSV------LQSLFSSVPAAAGLVHVSSAATRLTNSHAMGSFSGVAGGT .:: : :. . ..:. .. . : : .: . ...:.. KIAA12 AESEGLGLGCPSPCKRLDEELKRNLETLPSFSSDEEDSVAKNRDLQESISSAISALDDPP 540 550 560 570 580 590 1090 1100 1110 1120 1130 1140 KIAA18 VGGVFNHAVPSASAHPFGARVGRGAACGSATLGPSPLQAAASASASSFQAPASVETRPPP ..: :. .. : : .. .:: :: :: . ::.... : .: .::: KIAA12 LAG------PKDTSTPDGPPLAPAAAVP----GPPPLPGLPSANSNGTPEPPLLEEKPPP 600 610 620 630 640 1150 1160 1170 1180 KIAA18 -----------PPPPPPPPLP----PPAHLGRSPAGPPVLHAPPPPNAALP--PPPTLLA :::::::: : :: .. .:..:: :::: :.: ::: : KIAA12 TPPPAPTPQPQPPPPPPPPQPALPSPPPLVAPTPSSPPPPPLPPPPPPAMPSPPPPPPPA 650 660 670 680 690 700 1190 1200 1210 1220 1230 1240 KIAA18 SNPEPALLQSLASLPPNQAFLPPTSAASLPPANASLSIKLTSLPHKGARPSFTVHHQPLP . : : . :. :.. :: : : . . .. . . : . . .. KIAA12 AAPLAAPPEEPAAPSPEDPELPDTRPLHLAKKQETAAVCGETDEEAGESGGEGIFRERDE 710 720 730 740 750 760 1250 1260 1270 1280 KIAA18 RLALAQAAPGIPQASATG--PSAVWVSLGMPPPYAAHLSGVKPR . :. :.. : :: : .: KIAA12 FVIRAEDIPSLKLALQTGREPPPIWRVQKALLQKFTPEIKDGQRQFCATSNYLGYFGDAK 770 780 790 800 810 820 1285 residues in 1 query sequences 1986220 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:18:03 2008 done: Thu Dec 18 15:18:04 2008 Total Scan time: 0.790 Total Display time: 0.060 Function used was FASTA [version 34.26.5 April 26, 2007]