hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-13275700/chunk_1/iprscan-20080502-13275700.nocrc
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Query sequence: KIAA1811
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00220                                                 263.3    1.9e-74   1
SM00219                                                 -13.9    2.8e-10   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00219    1/1       1   223 [.     1   280 []   -13.9  2.8e-10
SM00220    1/1       1   222 [.     1   231 []   263.3  1.9e-74

Alignments of top-scoring domains:
SM00219: domain 1 of 1, from 1 to 223: score -13.9, E = 2.8e-10
                   *->ltlgkkLGeGaFGeVykGtlkieVAVKtLkeda.keeFlrEakiMkk
                      ++  +kL                       +++ ++   rE+ i+k 
    KIAA1811     1    IVNREKL-----------------------SESvLMKVEREIAILKL 24   

                   lGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdLldyLrknrpk
                   +  +Hp+++kL+ v   +       + l++v+E+++gG L dyL k+++ 
    KIAA1811    25 I--EHPHVLKLHDVYENK-------KYLYLVLEHVSGGELFDYLVKKGR- 64   

                   lslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvgenkvvKIsDFGL
                   l++++  +f  QI +  ++ +s  + HRDL   N L++e++ ++I+DFG+
    KIAA1811    65 LTPKEARKFFRQIVSALDFCHSYSICHRDLKPENLLLDEKNNIRIADFGM 114  

                   sRdlyddDkkGeskdyYrkkggkggktllPirWmAPEslkdgkFt.skSD
                   +     d       +   ++   g+          PE++k  k+ +   D
    KIAA1811   115 ASLQVGD-------SLLETSC--GSP-----HYACPEVIKGEKYDgRRAD 150  

                   VWSFGVlLWEiftlGeqPYpgeiqqfmsneevleylkkGyRlpkPendlp
                    WS GV L+ ++  G+ P  +      + +++le++k+G     P+    
    KIAA1811   151 MWSCGVILFALL-VGALPFDD-----DNLRQLLEKVKRG-VFHMPHF--- 190  

                   iSsvtCPdelYdlMlqCWaedPedRPtFsel...verl<-*
                         P++  +l +   + +Pe+R + ++++++  +l   
    KIAA1811   191 -----IPPDCQSLLRGMIEVEPEKRLSLEQIqkhPWYL    223  

SM00220: domain 1 of 1, from 1 to 222: score 263.3, E = 1.9e-74
                   *->YellkklGkGaFGkVylardkktgrlvAiKvik....erilrEikiL
                                        ++++        +++++   +++rEi+iL
    KIAA1811     1    -----------------IVNRE--------KLSesvlMKVEREIAIL 22   

                   kk.dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllkkrgrrglrkv
                   k   HP++ kL+dv+e++++lylV+E+++G  G+Lfd+l+k+gr      
    KIAA1811    23 KLiEHPHVLKLHDVYENkKYLYLVLEHVSG--GELFDYLVKKGR------ 64   

                   lsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds..hvKlaDFGl
                   l+++ear++frQi+saL+++Hs  I+HRDLKPeN+LLd+++++ +aDFG+
    KIAA1811    65 LTPkEARKFFRQIVSALDFCHSYSICHRDLKPENLLLDEknNIRIADFGM 114  

                   Arql......ttfvGTpeYmAPEvl...gYgkpavDiWSlGcilyElltG
                   A +  +++   t +G+p+Y  PEv+++++Y+++++D+WS+G+il+ ll+G
    KIAA1811   115 ASLQvgdsllETSCGSPHYACPEVIkgeKYDGRRADMWSCGVILFALLVG 164  

                   kpPFp..qldlifkkig..........SpeakdLikklLvkdPekRlta.
                     PF++++l ++++k++++  + ++  +p++ +L++++ +++PekRl+ +
    KIAA1811   165 ALPFDddNLRQLLEKVKrgvfhmphfiPPDCQSLLRGMIEVEPEKRLSLe 214  

                   eaLedeldikaHPff<-*
                   ++ +       HP+    
    KIAA1811   215 QIQK-------HPWY    222  

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