hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-13243271/chunk_1/iprscan-20080502-13243271.nocrc
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Query sequence: KIAA1809
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                  71.5    1.1e-16   3

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00355      1/3     197   220 ..     1    23 []    22.0    0.085
SM00355      2/3     404   426 ..     1    23 []    22.2    0.075
SM00355      3/3     432   454 ..     1    23 []    27.4    0.002

Alignments of top-scoring domains:
SM00355: domain 1 of 3, from 197 to 220: score 22.0, E = 0.085
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      y+C+  C++ f+s+  L +H +++H   
    KIAA1809   197    YTCTT-CKQPFTSAwFLLQHAQnTH    220  

SM00355: domain 2 of 3, from 404 to 426: score 22.2, E = 0.075
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                        C++ Cgk+f+ +++L+ H r+H   
    KIAA1809   404    KSCEF-CGKTFKFQsNLVVHRRSH    426  

SM00355: domain 3 of 3, from 432 to 454: score 27.4, E = 0.002
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ C+  +++++ LkrHm++H   
    KIAA1809   432    YKCNL-CDHACTQAsKLKRHMKTH    454  

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