hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-13243271/chunk_1/iprscan-20080502-13243271.nocrc
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Query sequence: KIAA1809
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00096.16.ls Zinc finger, C2H2 type                          73.2    7.7e-19   3
PF00096.16.fs Zinc finger, C2H2 type                          67.3    4.6e-17   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00096.16.fs   2/3     404   426 ..     1    24 []    26.0  3.1e-05
PF00096.16.ls   2/3     404   426 ..     1    24 []    28.0  3.1e-05
PF00096.16.fs   3/3     432   454 ..     1    24 []    25.8  3.4e-05
PF00096.16.ls   3/3     432   454 ..     1    24 []    27.8  3.5e-05

Alignments of top-scoring domains:
PF00096.16.fs: domain 2 of 3, from 404 to 426: score 26.0, E = 3.1e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                       +C+  Cgk+F+ +snL  H+r+H   
    KIAA1809   404    KSCE-FCGKTFKFQSNLVVHRRSH    426  

PF00096.16.ls: domain 2 of 3, from 404 to 426: score 28.0, E = 3.1e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                       +C+  Cgk+F+ +snL  H+r+H   
    KIAA1809   404    KSCE-FCGKTFKFQSNLVVHRRSH    426  

PF00096.16.fs: domain 3 of 3, from 432 to 454: score 25.8, E = 3.4e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC+  C+ ++++ s LkrH++tH   
    KIAA1809   432    YKCN-LCDHACTQASKLKRHMKTH    454  

PF00096.16.ls: domain 3 of 3, from 432 to 454: score 27.8, E = 3.5e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC+  C+ ++++ s LkrH++tH   
    KIAA1809   432    YKCN-LCDHACTQASKLKRHMKTH    454  

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