hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-13224927/chunk_1/iprscan-20080502-13224927.nocrc
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Query sequence: KIAA1808
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00412.12.fs LIM domain                                     177.9    7.7e-51   4
PF00412.12.ls LIM domain                                     161.6    1.9e-45   4
PF02209.10.fs Villin headpiece domain                         77.5    6.2e-25   1
PF02209.10.ls Villin headpiece domain                         79.5    9.9e-21   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00412.12.fs   1/4       1    47 [.    12    61 .]    35.6  1.1e-09
PF00412.12.ls   1/4       1    47 [.     1    61 []    23.4  9.4e-06
PF00412.12.ls   2/4      50   107 ..     1    61 []    44.3  3.9e-10
PF00412.12.fs   2/4      50   101 ..     1    55 [.    42.1  1.5e-11
PF00412.12.ls   3/4     120   176 ..     1    61 []    74.5  3.1e-19
PF00412.12.fs   3/4     120   176 ..     1    61 []    72.6  2.3e-20
PF00412.12.fs   4/4     179   220 ..     1    44 [.    27.7  2.1e-07
PF00412.12.ls   4/4     179   237 ..     1    61 []    19.4  2.8e-05
PF02209.10.fs   1/1     504   539 .]     1    36 []    77.5  6.2e-25
PF02209.10.ls   1/1     504   539 .]     1    36 []    79.5  9.9e-21

Alignments of top-scoring domains:
PF00412.12.fs: domain 1 of 4, from 1 to 47: score 35.6, E = 1.1e-09
                   *->elvrrAldkvwHpeCFrCavCgkpLgegdeffekdgsklYCkhDyyk
                      e++ r++dk++H++CF+C  Cg+ L+eg+ ff++ g +  C  Dy++
    KIAA1808     1    EVL-RVQDKYFHIKCFVCKACGCDLAEGG-FFVRQG-EYICTLDYQR 44   

                   lfg<-*
                   l+g   
    KIAA1808    45 LYG    47   

PF00412.12.ls: domain 1 of 4, from 1 to 47: score 23.4, E = 9.4e-06
                   *->CagCgkpIydrelvrrAldkvwHpeCFrCavCgkpLgegdeffekdg
                                 e++ r++dk++H++CF+C  Cg+ L+eg+ ff++ g
    KIAA1808     1    -----------EVL-RVQDKYFHIKCFVCKACGCDLAEGG-FFVRQG 34   

                   sklYCkhDyyklfg<-*
                    +  C  Dy++l+g   
    KIAA1808    35 -EYICTLDYQRLYG    47   

PF00412.12.ls: domain 2 of 4, from 50 to 107: score 44.3, E = 3.9e-10
                   *->CagCgkpIydrelvrrAldkvwHpeCFrCavCgkpLgegdeffekdg
                      C +C++ I +++++  Al+k +Hp+CF+CavC+ p+ +gd    ++g
    KIAA1808    50    CFSCDQFIEGEVVS--ALGKTYHPDCFVCAVCRLPFPPGD-RVTFNG 93   

                   sklYCkhDyyklfg<-*
                   ++  C+++ +       
    KIAA1808    94 KECMCQKCSLPVSV    107  

PF00412.12.fs: domain 2 of 4, from 50 to 101: score 42.1, E = 1.5e-11
                   *->CagCgkpIydrelvrrAldkvwHpeCFrCavCgkpLgegdeffekdg
                      C +C++ I +++++  Al+k +Hp+CF+CavC+ p+ +gd++ +  +
    KIAA1808    50    CFSCDQFIEGEVVS--ALGKTYHPDCFVCAVCRLPFPPGDRVTFNGK 94   

                   sklYCkhD<-*
                    +  C+++   
    KIAA1808    95 -ECMCQKC    101  

PF00412.12.ls: domain 3 of 4, from 120 to 176: score 74.5, E = 3.1e-19
                   *->CagCgkpIydrelvrrAldkvwHpeCFrCavCgkpLgegdeffekdg
                      C+gCg  I   + + +Aldk+wH+ CF+C  Cgk L+    + +kdg
    KIAA1808   120    CGGCGTEIKNGQAL-VALDKHWHLGCFKCKSCGKLLNAE--YISKDG 163  

                   sklYCkhDyyklfg<-*
                    ++YC++Dy+++fg   
    KIAA1808   164 -LPYCEADYHAKFG    176  

PF00412.12.fs: domain 3 of 4, from 120 to 176: score 72.6, E = 2.3e-20
                   *->CagCgkpIydrelvrrAldkvwHpeCFrCavCgkpLgegdeffekdg
                      C+gCg  I   + + +Aldk+wH+ CF+C  Cgk L+    + +kdg
    KIAA1808   120    CGGCGTEIKNGQAL-VALDKHWHLGCFKCKSCGKLLNAE--YISKDG 163  

                   sklYCkhDyyklfg<-*
                    ++YC++Dy+++fg   
    KIAA1808   164 -LPYCEADYHAKFG    176  

PF00412.12.fs: domain 4 of 4, from 179 to 220: score 27.7, E = 2.1e-07
                   *->CagCgkpIydrelvrrAldkvwHpeCFrCavCgkpLgegdeffe<-*
                      C +C k I++r+l   A++k++Hp+C  C  Cg+ ++eg e ++   
    KIAA1808   179    CDSCEKYITGRVLE--AGEKHYHPSCALCVRCGQMFAEGEEMYL    220  

PF00412.12.ls: domain 4 of 4, from 179 to 237: score 19.4, E = 2.8e-05
                   *->CagCgkpIydrelvrrAldkvwHpeCFrCavCgkpLgegdeffekdg
                      C +C k I++r+l   A++k++Hp+C  C  Cg+ ++eg e ++   
    KIAA1808   179    CDSCEKYITGRVLE--AGEKHYHPSCALCVRCGQMFAEGEEMYLQGS 223  

                   sk...lYCkhDyyklfg<-*
                       ++ C++   ++ +   
    KIAA1808   224 -SiwhPACRQ--AARTE    237  

PF02209.10.fs: domain 1 of 1, from 504 to 539: score 77.5, E = 6.2e-25
                   *->YLsdeDFeevFgMtkeEFykLPlWKqnqLKKklgLF<-*
                      +Ls+e+F+evFgM++eEF++L+lWK+n+LKKk+ LF   
    KIAA1808   504    HLSPEEFQEVFGMSIEEFDRLALWKRNDLKKKALLF    539  

PF02209.10.ls: domain 1 of 1, from 504 to 539: score 79.5, E = 9.9e-21
                   *->YLsdeDFeevFgMtkeEFykLPlWKqnqLKKklgLF<-*
                      +Ls+e+F+evFgM++eEF++L+lWK+n+LKKk+ LF   
    KIAA1808   504    HLSPEEFQEVFGMSIEEFDRLALWKRNDLKKKALLF    539  

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