hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-13142052/chunk_1/iprscan-20080502-13142052.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1803 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00355 434.8 4.6e-126 23 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00355 1/23 38 61 .. 1 23 [] 15.5 5.6 SM00355 2/23 110 133 .. 1 23 [] 22.1 0.079 SM00355 3/23 157 180 .. 1 23 [] 18.2 1.2 SM00355 4/23 214 237 .. 1 23 [] 13.9 8.6 SM00355 5/23 315 338 .. 1 23 [] 20.4 0.25 SM00355 6/23 360 383 .. 1 23 [] 14.3 7.7 SM00355 7/23 422 445 .. 1 23 [] 19.1 0.62 SM00355 8/23 505 528 .. 1 23 [] 21.8 0.094 SM00355 9/23 542 565 .. 1 23 [] 15.1 6.2 SM00355 10/23 612 635 .. 1 23 [] 14.4 7.5 SM00355 11/23 691 715 .. 1 23 [] 8.4 36 SM00355 12/23 737 759 .. 1 23 [] 21.6 0.11 SM00355 13/23 813 835 .. 1 23 [] 17.6 1.7 SM00355 14/23 897 919 .. 1 23 [] 23.2 0.037 SM00355 15/23 931 953 .. 1 23 [] 22.8 0.049 SM00355 16/23 960 983 .. 1 23 [] 19.2 0.57 SM00355 17/23 989 1012 .. 1 23 [] 25.7 0.0063 SM00355 18/23 1097 1120 .. 1 23 [] 18.7 0.84 SM00355 19/23 1126 1149 .. 1 23 [] 15.0 6.4 SM00355 20/23 1160 1182 .. 1 23 [] 18.9 0.7 SM00355 21/23 1206 1228 .. 1 23 [] 24.5 0.014 SM00355 22/23 1234 1257 .. 1 23 [] 20.6 0.22 SM00355 23/23 1320 1342 .. 1 23 [] 23.7 0.025 Alignments of top-scoring domains: SM00355: domain 1 of 23, from 38 to 61: score 15.5, E = 5.6 *->ykCpigCgksfssk.aLkrHmr.vH<-* + C++ C++ ++ + H++++H KIAA1803 38 FFCQH-CDYGNRTVkGVLIHYQkKH 61 SM00355: domain 2 of 23, from 110 to 133: score 22.1, E = 0.079 *->ykCpigCgksfssk.aLkrHmr.vH<-* +kC + C+++ + aL++H+++ H KIAA1803 110 LKCRQ-CSYTSPYFyALRKHIKkDH 133 SM00355: domain 3 of 23, from 157 to 180: score 18.2, E = 1.2 *->ykCpigCgksfssk.aLkrHmr.vH<-* y+C++ C +s + ++ L H++++H KIAA1803 157 YHCEW-CIYSHTEPnGLLLHYQrRH 180 SM00355: domain 4 of 23, from 214 to 237: score 13.9, E = 8.6 *->ykCpigCgksfssk.aLkrHmr.vH<-* y+C C + s + ++H++ H KIAA1803 214 YRCRD-CVFEAVSIwDITNHYQaFH 237 SM00355: domain 5 of 23, from 315 to 338: score 20.4, E = 0.25 *->ykCpigCgksfssk.aLkrHmr.vH<-* y+C++ C+ +++ + L H+ ++H KIAA1803 315 YQCTV-CQSEYNNLhGLLTHYGkKH 338 SM00355: domain 6 of 23, from 360 to 383: score 14.3, E = 7.7 *->ykCpigCgksfssk.aLkrHmr.vH<-* ykC + C++ ++ + H++++H KIAA1803 360 YKCRH-CPYINTRIhGVLTHYQkRH 383 SM00355: domain 7 of 23, from 422 to 445: score 19.1, E = 0.62 *->ykCpigCgksfssk.aLkrHmr.vH<-* y+C++ C+++ + + Lk H+ + H KIAA1803 422 YRCKL-CPYTHGTLeKLKIHYEkYH 445 SM00355: domain 8 of 23, from 505 to 528: score 21.8, E = 0.094 *->ykCpigCgksfssk.aLkrHmr.vH<-* ++C++ C++ +s+++ rH+r +H KIAA1803 505 FRCQL-CKYFCSTRkGIARHYRiKH 528 SM00355: domain 9 of 23, from 542 to 565: score 15.1, E = 6.2 *->ykCpigCgksfssk.aLkrHmr.vH<-* +kC + C ++ + ++ L H++++H KIAA1803 542 FKCAL-CAYTNPIRkGLAAHYQkRH 565 SM00355: domain 10 of 23, from 612 to 635: score 14.4, E = 7.5 *->ykCpigCgksfssk.aLkrHmr.vH<-* kC++ C+++ sk+ + H++++H KIAA1803 612 KKCSL-CSFQSFSKkGIVSHYMkRH 635 SM00355: domain 11 of 23, from 691 to 715: score 8.4, E = 36 *->ykCpigCg.ksfssk.aLkrHmr.vH<-* ++C + C + sfs+++ L H+ + H KIAA1803 691 FRCIK-CFkLSFSTAeLLCMHYTdHH 715 SM00355: domain 12 of 23, from 737 to 759: score 21.6, E = 0.11 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ C+ + s +L+ H+ +H KIAA1803 737 YQCKH-CDSKLQSTaELTSHLNIH 759 SM00355: domain 13 of 23, from 813 to 835: score 17.6, E = 1.7 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ C ++ ++ +a +H+r+H KIAA1803 813 YKCKF-CVEVHPTLrAICNHLRKH 835 SM00355: domain 14 of 23, from 897 to 919: score 23.2, E = 0.037 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ C+++ s + L+ H r+H KIAA1803 897 YHCSQ-CDRVLMSMqGLRSHERSH 919 SM00355: domain 15 of 23, from 931 to 953: score 22.8, E = 0.049 *->ykCpigCgksfssk.aLkrHmrvH<-* y C++ C+++ +++L rHm++H KIAA1803 931 YSCQY-CSFVSAFRhNLDRHMQTH 953 SM00355: domain 16 of 23, from 960 to 983: score 19.2, E = 0.57 *->ykCpigCgksfssk.aLkrHmr.vH<-* ++C++ C+++ s + Lk H+ + H KIAA1803 960 FRCKL-CSFKSSYNsRLKTHILkAH 983 SM00355: domain 17 of 23, from 989 to 1012: score 25.7, E = 0.0063 *->ykCpigCgksfssk.aLkrHmr.vH<-* ykC++ C++s+ + ++Lk+H +vH KIAA1803 989 YKCSW-CSFSTMTIsQLKEHSLkVH 1012 SM00355: domain 18 of 23, from 1097 to 1120: score 18.7, E = 0.84 *->ykCpigCgksfssk.aLkrHmr.vH<-* ++C++ C +s ++ +rH+r++H KIAA1803 1097 LHCEF-CEFSSGYIqSIRRHYRdKH 1120 SM00355: domain 19 of 23, from 1126 to 1149: score 15.0, E = 6.4 *->ykCpigCgksfssk.aLkrHmr.vH<-* +kC+ C++ + k+a++ H+ H KIAA1803 1126 FKCKD-CSFYTGFKsAFTMHVEaGH 1149 SM00355: domain 20 of 23, from 1160 to 1182: score 18.9, E = 0.7 *->ykCpigCgksfssk.aLkrHmrvH<-* ++Cp+ C ++++ k++++ H+ H KIAA1803 1160 LRCPL-CLYHTKYKrNMIDHIVLH 1182 SM00355: domain 21 of 23, from 1206 to 1228: score 24.5, E = 0.014 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C++ C +++ss ++L++H+ +H KIAA1803 1206 FRCDK-CTFTCSSDeSLQQHIEKH 1228 SM00355: domain 22 of 23, from 1234 to 1257: score 20.6, E = 0.22 *->ykCpigCgksfssk.aLkrHmr.vH<-* ykC++ C + +++ ++L H+r+ H KIAA1803 1234 YKCQL-CYYETKHTeELDSHLRdEH 1257 SM00355: domain 23 of 23, from 1320 to 1342: score 23.7, E = 0.025 *->ykCpigCgksfssk.aLkrHmrvH<-* + C++ Cg+ fs+ ++ +rH+ +H KIAA1803 1320 FPCEF-CGRAFSQGsEWERHVLRH 1342 //