hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-13142052/chunk_1/iprscan-20080502-13142052.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA1803
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00096.16.ls Zinc finger, C2H2 type                         283.8      3e-82  23
PF00096.16.fs Zinc finger, C2H2 type                         238.7    1.2e-68  22

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00096.16.ls  12/23    737   759 ..     1    24 []    18.8    0.018
PF00096.16.ls  14/23    897   919 ..     1    24 []    19.2    0.014
PF00096.16.ls  15/23    931   953 ..     1    24 []    21.0   0.0038
PF00096.16.ls  21/23   1206  1228 ..     1    24 []    20.1   0.0075
PF00096.16.fs  22/22   1320  1342 ..     1    24 []    25.4  4.4e-05
PF00096.16.ls  23/23   1320  1342 ..     1    24 []    27.4  4.8e-05

Alignments of top-scoring domains:
PF00096.16.ls: domain 12 of 23, from 737 to 759: score 18.8, E = 0.018
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +C+ +  + ++L++Hl++H   
    KIAA1803   737    YQCK-HCDSKLQSTAELTSHLNIH    759  

PF00096.16.ls: domain 14 of 23, from 897 to 919: score 19.2, E = 0.014
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y C+ +C+++  +   L++H r+H   
    KIAA1803   897    YHCS-QCDRVLMSMQGLRSHERSH    919  

PF00096.16.ls: domain 15 of 23, from 931 to 953: score 21.0, E = 0.0038
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +C  +   ++nL rH++tH   
    KIAA1803   931    YSCQ-YCSFVSAFRHNLDRHMQTH    953  

PF00096.16.ls: domain 21 of 23, from 1206 to 1228: score 20.1, E = 0.0075
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C+ +C  ++s+ ++L++H+ +H   
    KIAA1803  1206    FRCD-KCTFTCSSDESLQQHIEKH    1228 

PF00096.16.fs: domain 22 of 22, from 1320 to 1342: score 25.4, E = 4.4e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      + C+  Cg++Fs+ s+ +rH  +H   
    KIAA1803  1320    FPCE-FCGRAFSQGSEWERHVLRH    1342 

PF00096.16.ls: domain 23 of 23, from 1320 to 1342: score 27.4, E = 4.8e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      + C+  Cg++Fs+ s+ +rH  +H   
    KIAA1803  1320    FPCE-FCGRAFSQGSEWERHVLRH    1342 

//