hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-13073668/chunk_1/iprscan-20080502-13073668.nocrc
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Query sequence: KIAA1799
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00054                                                  31.0    0.00016   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00054    1/3     110   138 ..     1    29 []     8.8       13
SM00054    2/3     146   174 ..     1    29 []    10.3      8.5
SM00054    3/3     411   439 ..     1    29 []    11.9      5.3

Alignments of top-scoring domains:
SM00054: domain 1 of 3, from 110 to 138: score 8.8, E = 13
                   *->elkeaFrefDkDgdGkIdfeEfkallksl<-*
                      el + F+ +D++ dG I   ++ ++l++    
    KIAA1799   110    ELLKSFKQLDVNDDGCILHTDLYKFLTKR    138  

SM00054: domain 2 of 3, from 146 to 174: score 10.3, E = 8.5
                   *->elkeaFrefDkDgdGkIdfeEfkallksl<-*
                      e++++++++D++ dGk d+  f++l ++    
    KIAA1799   146    EVNAIINLADVNADGKFDYIKFCKLYMTT    174  

SM00054: domain 3 of 3, from 411 to 439: score 11.9, E = 5.3
                   *->elkeaFrefDkDgdGkIdfeEfkallksl<-*
                       l ++F+++D Dg+G +++eE+  +  +    
    KIAA1799   411    TLSDIFEVIDLDGNGLLSLEEYNFFELRT    439  

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