# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fh27316.fasta.huge -Q ../query/KIAA1792.ptfa ./tmplib.25089 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1792, 808 aa
 vs ./tmplib.25089 library

1986697 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 4.5921+/-0.00474; mu= 17.0723+/- 0.322
 mean_var=82.7655+/-19.568, 0's: 0 Z-trim: 3  B-trim: 0 in 0/40
 Lambda= 0.140977

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1800  ( 736 res)   fj21226                     ( 736)  214 53.9 7.2e-08


>>KIAA1800  ( 736 res)   fj21226                          (736 aa)
 initn: 245 init1:  92 opt: 214  Z-score: 233.1  bits: 53.9 E(): 7.2e-08
Smith-Waterman score: 304;  20.930% identity (53.488% similar) in 602 aa overlap (239-804:184-729)

      210       220       230       240       250       260        
KIAA17 DYLCKLSSLPAEQHPVLLGSTSFALLCQLSVKKIQLFDTQDLINVLKAFVILGIPHSHSM
                                     .:. .:. ..:: .  .:...::     .:
KIAA18 EMIPLCNHPASFVKLFVALGPIAGPEEKKQLKSTMLLMSEDLTGE-QALAVLG-----AM
           160       170       180       190        200            

      270            280            290       300           310    
KIAA17 LDVYETKCC-----HQVWEMNMD-----QLLLVADLWRYLGRKVPRFL----NIFSSYLN
        :.   . :      .: . ..:     .:: ...   .:  .  .:.    ... :::.
KIAA18 GDMESRNSCLIKRVTSVLHKHLDGYKPLELLKITQELTFLHFQRKEFFAKLRELLLSYLK
       210       220       230       240       250       260       

          320       330       340       350       360       370    
KIAA17 LHWKDLSLSQLVHLIYVIGENRQVSQDLMQKLESLILKYIDLINLEEVGTICLGFFKSS-
         .    .: ::. : ..  . ....  ....:. .:   :: ::   .:  : ... . 
KIAA18 NSFIPTEVSVLVRAISLL-PSPHLDEVGISRIEA-VLPQCDLNNLSSFATSVLRWIQHDH
       270       280        290       300        310       320     

                 380       390       400        410       420      
KIAA17 ---TNLSEF---VMRKIGDLACANIQHLSSRSLVNI-VKMFRFTHVDHINFMKQIGEIAP
           :..     ...:.   .   .:: .: .:.   .: .. .   . ......     
KIAA18 VYLDNMTAKQLKLLQKLDHYGRQRLQHSNSLDLLRKELKSLKGNTFPE-SLLEEMIATLQ
         330       340       350       360       370        380    

        430       440       450       460       470       480      
KIAA17 QRIPSLGVQGVMHLTLYCSALRFLNEGVMNAVAASLPPRVAHCRSKDVAKILWSFGTLNY
       . . ...  .: ... . :.  .:.  ... .:.    .. . .   .  :.  :..:::
KIAA18 HFMDDINYINVGEIASFISSTDYLSTLLLDRIASVAVQQIEKIHPFTIPAIIRPFSVLNY
          390       400       410       420       430       440    

        490       500       510       520       530       540      
KIAA17 KPPNAEEFYSSLISEIHRKMPEFNQYPEHLPTCLLGLAFLEYFPVELIDFALSPGFVRLA
        ::. .:: .. .....  .  ..  :  :    ..:: ::::: .:.   ..  :  ::
KIAA18 DPPQRDEFLGTCVQHLNSYLGILD--PFILVFLGFSLATLEYFPEDLLKAIFNIKF--LA
          450       460         470       480       490         500

        550                560       570       580       590       
KIAA17 QERTKFDLLK---------ELYTLDGTVGIECPDYRGNRLSTHLQQEGSELLWYLAEKDM
       .  .....:.         .:. :. .: .:::...   .  .. :.      :  .: .
KIAA18 RLDSQLEILSPSRSARVQFHLMELNRSVCLECPEFQIPWFHDRFCQQ------Y--NKGI
              510       520       530       540               550  

       600        610       620       630       640       650      
KIAA17 NSKPEFLETVF-LLETMLGGPQYVKHHMILPHTRSSDLEVQLDVNLKPLPFNREATPAEN
       ..     . .: .:  .::: . ::  .. :. .. :.:  ::   ::::..     ..:
KIAA18 GGMDGTQQQIFKMLAEVLGGINCVKASVLTPYYHKVDFECILDKRKKPLPYG-----SHN
            560       570       580       590       600            

        660       670       680       690       700         710    
KIAA17 VAKLRLEHVGVSLTDDLMNKLLKGKARGHFQGKTESEPGQQPMELE--NKAAVPLGGFLC
       .:  .: ..    . ..... :               :: . . ::  .. :.:   .  
KIAA18 IALGQLPEMPWESNIEIVGSRLP--------------PGAERIALEFLDSKAMP---WES
       610       620       630                     640          650

          720         730       740       750       760       770  
KIAA17 NVADKSGAMEMAG--LCPAACMQTPRMKLAVQFTNRNQYCYGSRDLLGLHNMKRRQLARL
       :.       :..:  : :.:       ..:..: . .  : .   . :   ::.:.:  :
KIAA18 NI-------EIVGSRLPPGA------ERIALEFLDSKALCRNIPHMKGKSAMKKRHLEIL
                     660             670       680       690       

            780       790       800           
KIAA17 GYRVVELSYWEWLPLLKRTRLEKLAFLHEKVFTSAL   
       ::::...: .::  .   :.  .. .:.: .:       
KIAA18 GYRVIQISQFEWNSMALSTKDARMDYLRECIFGEVKSCL
       700       710       720       730      




808 residues in 1 query   sequences
1986697 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:17:13 2008 done: Thu Dec 18 15:17:14 2008
 Total Scan time:  0.590 Total Display time:  0.030

Function used was FASTA [version 34.26.5 April 26, 2007]