# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fh19009.fasta.huge -Q ../query/KIAA1786.ptfa ./tmplib.25089 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1786, 400 aa
 vs ./tmplib.25089 library

1987105 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 3.9123+/-0.00454; mu= 17.9447+/- 0.310
 mean_var=73.3408+/-17.009, 0's: 0 Z-trim: 1  B-trim: 0 in 0/40
 Lambda= 0.149762

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1583  ( 435 res)   fj06651                     ( 435)  268 67.1 2.2e-12


>>KIAA1583  ( 435 res)   fj06651                          (435 aa)
 initn: 365 init1: 154 opt: 268  Z-score: 314.2  bits: 67.1 E(): 2.2e-12
Smith-Waterman score: 423;  30.530% identity (59.813% similar) in 321 aa overlap (13-323:130-415)

                                 10        20        30        40  
KIAA17                   LTSTAFGNMDKFPFNWKLKSHILDSSIYSNRPKVQTLFYVTG
                                     :  : ...  .....   .: ...::.. :
KIAA15 PRAQPLLRASYPPFATQQVVPPRVTEPHQRPVPWDVRAVSVEAAVTPAEPYARVLFHLKG
     100       110       120       130       140       150         

             50        60        70        80        90       100  
KIAA17 MGWDDSDLTEDLPCVKMFAFPEAREVAASCRLQGAPGLCVAELELLPEWFSSGLDLEPEE
       . :  .  . .:::... :   :  .  .::.: . : ::.::::  .:::..       
KIAA15 QDWPPG--SGSLPCARLHATHPAGTAHQACRFQPSLGACVVELELPSHWFSQA-------
     160         170       180       190       200       210       

            110       120        130       140       150       160 
KIAA17 EIPALLGGTTMELFFTLYPADKA-GQCPLEEEGKWENNIHSGLESPQQAFPARERIGSVV
             . :  :: .:: :: .. : :     :. :.:     .  .::.:    .:.: 
KIAA15 ------STTRAELAYTLEPAAEGPGGC-----GSGEEN-----DPGEQALP----VGGVE
                    220       230                 240           250

             170       180       190       200       210       220 
KIAA17 VYPTQDDLKWSLVSLDENVVISVPLNLVREGDTATFLVSLTSSSVADQFTLRIKAAAGVK
       . :. :  ... : ::: :.. ::   :: :.  .  . :  . .:. .:::::.  :..
KIAA15 LRPA-DPPQYQEVPLDEAVTLRVPDMPVRPGQLFSATLLLRHNFTASLLTLRIKVKKGLH
               260       270       280       290       300         

             230       240       250            260       270      
KIAA17 ITAVRVSSEDQWAVQEEIDNGSTQTSATLTCMGHR-----PDTQSRVNGSFYEILQVDFG
       .::.: ..   :... .  .:: . .. .::  ::     ::. : .. :  :.: ::: 
KIAA15 VTAARPAQPTLWTAKLDRFKGSRHHTTLITC--HRAGLTEPDS-SPLELS--EFLWVDFV
     310       320       330       340         350          360    

        280         290         300       310       320       330  
KIAA17 IDNSSD--LAGAQQITWQVEYPIE--DSMSELVVSEIFVSQTTFVGIVPLAMDTEVLNTA
       ..::.   .: .. .:::.::: .  .. .. .: ::.::.  . ...:::         
KIAA15 VENSTGGGVAVTRPVTWQLEYPGQAPEAEKDKMVWEILVSERDIRALIPLAKVRRPPSLP
          370       380       390       400       410       420    

            340       350       360       370       380       390  
KIAA17 ILTGKPVSVPVKVVGVQEDGSVVDVSESVECKSADEDVIKVRGDLSTAVLSAQSFLSFLL
                                                                   
KIAA15 GKAGGQVPGAP                                                 
          430                                                      




400 residues in 1 query   sequences
1987105 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:17:00 2008 done: Thu Dec 18 15:17:00 2008
 Total Scan time:  0.400 Total Display time:  0.010

Function used was FASTA [version 34.26.5 April 26, 2007]