hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-12435750/chunk_1/iprscan-20080502-12435750.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1785 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00023.20.ls Ankyrin repeat 221.9 1.4e-63 8 PF00023.20.fs Ankyrin repeat 216.5 5.6e-62 8 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00023.20.fs 1/8 40 73 .. 1 33 [] 28.5 5.7e-07 PF00023.20.ls 1/8 40 73 .. 1 33 [] 30.5 5.3e-06 PF00023.20.ls 2/8 82 114 .. 1 33 [] 29.6 1e-05 PF00023.20.fs 2/8 82 114 .. 1 33 [] 27.6 1e-06 PF00023.20.ls 3/8 115 147 .. 1 33 [] 26.9 6.7e-05 PF00023.20.fs 3/8 115 147 .. 1 33 [] 24.9 5.9e-06 PF00023.20.ls 4/8 148 180 .. 1 33 [] 38.1 2.8e-08 PF00023.20.fs 4/8 148 180 .. 1 33 [] 36.1 4.3e-09 PF00023.20.ls 5/8 181 212 .. 1 33 [] 13.5 0.32 PF00023.20.fs 5/8 181 206 .. 1 26 [. 19.7 0.00016 PF00023.20.ls 6/8 213 246 .. 1 33 [] 13.4 0.33 PF00023.20.fs 6/8 213 236 .. 1 24 [. 13.8 0.0071 PF00023.20.ls 7/8 481 526 .. 1 33 [] 33.9 5.3e-07 PF00023.20.fs 7/8 481 526 .. 1 33 [] 31.9 6.7e-08 PF00023.20.ls 8/8 527 559 .. 1 33 [] 35.9 1.3e-07 PF00023.20.fs 8/8 527 559 .. 1 33 [] 33.9 1.8e-08 Alignments of top-scoring domains: PF00023.20.fs: domain 1 of 8, from 40 to 73: score 28.5, E = 5.7e-07 *->dGfTPLHlAalrgnlevvklLls.qGAdlnaqdd<-* +G TPL +Aa++g+l++v++Ll+++ A++ + KIAA1785 40 NGATPLLMAARYGHLDMVEFLLEqCSASIEVGGS 73 PF00023.20.ls: domain 1 of 8, from 40 to 73: score 30.5, E = 5.3e-06 *->dGfTPLHlAalrgnlevvklLls.qGAdlnaqdd<-* +G TPL +Aa++g+l++v++Ll+++ A++ + KIAA1785 40 NGATPLLMAARYGHLDMVEFLLEqCSASIEVGGS 73 PF00023.20.ls: domain 2 of 8, from 82 to 114: score 29.6, E = 1e-05 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G PL A+ g+l+vv+ Ll++GA++n ++ KIAA1785 82 EGAPPLWAASAAGHLKVVQSLLNHGASVNNTTL 114 PF00023.20.fs: domain 2 of 8, from 82 to 114: score 27.6, E = 1e-06 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G PL A+ g+l+vv+ Ll++GA++n ++ KIAA1785 82 EGAPPLWAASAAGHLKVVQSLLNHGASVNNTTL 114 PF00023.20.ls: domain 3 of 8, from 115 to 147: score 26.9, E = 6.7e-05 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* TPL A++ g+le+vk+L+++ Adl + ++ KIAA1785 115 TNSTPLRAACFDGHLEIVKYLVEHKADLEVSNR 147 PF00023.20.fs: domain 3 of 8, from 115 to 147: score 24.9, E = 5.9e-06 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* TPL A++ g+le+vk+L+++ Adl + ++ KIAA1785 115 TNSTPLRAACFDGHLEIVKYLVEHKADLEVSNR 147 PF00023.20.ls: domain 4 of 8, from 148 to 180: score 38.1, E = 2.8e-08 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G T+L++ +++g++e++++Ll++GAd+n + KIAA1785 148 HGHTCLMISCYKGHKEIAQYLLEKGADVNRKSV 180 PF00023.20.fs: domain 4 of 8, from 148 to 180: score 36.1, E = 4.3e-09 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G T+L++ +++g++e++++Ll++GAd+n + KIAA1785 148 HGHTCLMISCYKGHKEIAQYLLEKGADVNRKSV 180 PF00023.20.ls: domain 5 of 8, from 181 to 212: score 13.5, E = 0.32 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+T+LH a++g+l+++k+Ll + +d KIAA1785 181 KGNTALHDCAESGSLDIMKMLLM-YCAKMEKDG 212 PF00023.20.fs: domain 5 of 8, from 181 to 206: score 19.7, E = 0.00016 *->dGfTPLHlAalrgnlevvklLlsqGA<-* G+T+LH a++g+l+++k+Ll + A KIAA1785 181 KGNTALHDCAESGSLDIMKMLLMYCA 206 PF00023.20.ls: domain 6 of 8, from 213 to 246: score 13.4, E = 0.33 *->dGfTPLHlAalrgnlevvklLls.qGAdlnaqdd<-* +G+TPL A+ g++++v +L ++ + + + KIAA1785 213 YGMTPLLSASVTGHTNIVDFLTHhAQTSKTERIN 246 PF00023.20.fs: domain 6 of 8, from 213 to 236: score 13.8, E = 0.0071 *->dGfTPLHlAalrgnlevvklLlsq<-* +G+TPL A+ g++++v +L + KIAA1785 213 YGMTPLLSASVTGHTNIVDFLTHH 236 PF00023.20.ls: domain 7 of 8, from 481 to 526: score 33.9, E = 5.3e-07 *->dGfTPLHlAalrg.............nlevvklLlsqGAdlnaqdd< + f+PLHlA+ ++ + + + ++l+v L+++GAd+n++d KIAA1785 481 NNFSPLHLAVDKNttcvgrypvckfpSLQVTAILIECGADVNVRDS 526 -* KIAA1785 - - PF00023.20.fs: domain 7 of 8, from 481 to 526: score 31.9, E = 6.7e-08 *->dGfTPLHlAalrg.............nlevvklLlsqGAdlnaqdd< + f+PLHlA+ ++ + + + ++l+v L+++GAd+n++d KIAA1785 481 NNFSPLHLAVDKNttcvgrypvckfpSLQVTAILIECGADVNVRDS 526 -* KIAA1785 - - PF00023.20.ls: domain 8 of 8, from 527 to 559: score 35.9, E = 1.3e-07 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* d ++PLH+Aal+++++++ lL++ GA +a++ KIAA1785 527 DDNSPLHIAALNNHPDIMNLLIKSGAHFDATNL 559 PF00023.20.fs: domain 8 of 8, from 527 to 559: score 33.9, E = 1.8e-08 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* d ++PLH+Aal+++++++ lL++ GA +a++ KIAA1785 527 DDNSPLHIAALNNHPDIMNLLIKSGAHFDATNL 559 //