hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-11585656/chunk_1/iprscan-20080502-11585656.nocrc
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Query sequence: KIAA1760
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00220                                                 227.3    1.3e-63   1
SM00219                                                  71.7    9.2e-17   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00219      1/1     190   448 ..     1   280 []    71.7  9.2e-17
SM00220      1/1     190   448 ..     1   231 []   227.3  1.3e-63

Alignments of top-scoring domains:
SM00219: domain 1 of 1, from 190 to 448: score 71.7, E = 9.2e-17
                   *->ltlgkkLGeGaFGeVykGtlk...ieVAVKtLkeda.....keeFlr
                      l+++ +LG+G F +VykG  +++ +eVA   L++ + ++ +++ F +
    KIAA1760   190    LKFDIELGRGSFKTVYKGLDTetwVEVAWCELQDRKltkleRQRFKE 236  

                   EakiMkklGgkHpNiVkLl....GvcteegrrFmevePlmivmEymegGd
                   Ea+++k l  +HpNiV++++  +  +  +         + +v+E+m  G 
    KIAA1760   237 EAEMLKGL--QHPNIVRFYdfweSSAKGK-------RCIVLVTELMTSGT 277  

                   LldyLrknrpklslsdLlsfAlQIAkGMeYLesk..nfvHRDLAARNcLv
                   L+ yL++ +   +++ L s++ QI kG  +L+ ++++++HRDL + N+ +
    KIAA1760   278 LKTYLKRFKV-MKPKVLRSWCRQILKGLLFLHTRtpPIIHRDLKCDNIFI 326  

                   genk.vvKIsDFGLsRdlyddDkkGeskdyYrkkggkggktllPirWmAP
                   + + + vKI+D GL+           +k+++ +       +      mAP
    KIAA1760   327 TGPTgSVKIGDLGLATLKRAS----FAKSVIGT-----PEF------MAP 361  

                   EslkdgkFtskSDVWSFGVlLWEiftlGeqPYpgeiqqfmsneevleylk
                   E   ++ + +  DV++FG ++ E+ t   +  +       +++++++++ 
    KIAA1760   362 EMYEEH-YDESVDVYAFGMCMLEMATSEYPYSEC-----QNAAQIYRKVT 405  

                   kGyRlpkPendlpiSsvtCPdelYdlMlqCWaedPedRPtFsel..verl
                    G  +   e +         +e+ +++ +C   + e+R   ++l ++ ++
    KIAA1760   406 CGIKPASFEKV-------HDPEIKEIIGECICKNKEERYEIKDLlsHAFF 448  

                   <-*
                      
    KIAA1760     -     -    

SM00220: domain 1 of 1, from 190 to 448: score 227.3, E = 1.3e-63
                   *->YellkklGkGaFGkVylardkktgrlvAiKvik.........erilr
                       ++  +lG+G+F +Vy++ d++t  +vA  ++ +++ ++ +++r++ 
    KIAA1760   190    LKFDIELGRGSFKTVYKGLDTETWVEVAWCELQdrkltklerQRFKE 236  

                   EikiLkk.dHPNIVkLydvfed.....dklylVmEyceGdlGdLfdllkk
                   E ++Lk  +HPNIV++yd++e++ +++ ++ lV+E++    G+L+++lk+
    KIAA1760   237 EAEMLKGlQHPNIVRFYDFWESsakgkRCIVLVTELMTS--GTLKTYLKR 284  

                   rgrrglrkvlsE.earfyfrQilsaLeYLHsq..gIiHRDLKPeNiLLds
                    +       + +++ r+++rQil++L +LH +++ IiHRDLK +Ni+++ 
    KIAA1760   285 FKV------MKPkVLRSWCRQILKGLLFLHTRtpPIIHRDLKCDNIFITG 328  

                   ...hvKlaDFGlArql.....ttfvGTpeYmAPEvl..gYgkpavDiWSl
                   +++ vK++D GlA++ + +  ++++GTpe+mAPE+ +++Y+  +vD++++
    KIAA1760   329 ptgSVKIGDLGLATLKrasfaKSVIGTPEFMAPEMYeeHYDE-SVDVYAF 377  

                   GcilyElltGkpPFp...qldlifkkig............SpeakdLikk
                   G ++ E++t + P+++ ++ ++i++k+  + ++ + ++ ++pe k++i  
    KIAA1760   378 GMCMLEMATSEYPYSecqNAAQIYRKVTcgikpasfekvhDPEIKEIIGE 427  

                   lLvkdPekRlta.eaLedeldikaHPff<-*
                   + +k+ e+R+ ++++L        H ff   
    KIAA1760   428 CICKNKEERYEIkDLLS-------HAFF    448  

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