# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fh20539mrp1.fasta.huge -Q ../query/KIAA1758.ptfa ./tmplib.25089 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1758, 1662 aa vs ./tmplib.25089 library 1985843 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 16.4539+/-0.0107; mu= -41.2861+/- 0.717 mean_var=693.5048+/-169.220, 0's: 0 Z-trim: 14 B-trim: 0 in 0/40 Lambda= 0.048702 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 41, opt: 29, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1433 ( 652 res) hh05535 ( 652) 833 74.8 6.6e-14 KIAA1223 ( 1089 res) pg00513 (1089) 349 41.0 0.0017 >>KIAA1433 ( 652 res) hh05535 (652 aa) initn: 1264 init1: 464 opt: 833 Z-score: 341.5 bits: 74.8 E(): 6.6e-14 Smith-Waterman score: 1315; 40.426% identity (63.982% similar) in 658 aa overlap (29-606:13-652) 10 20 30 40 50 60 KIAA17 ATDGASCEPDLSRAPEDAAGAAAEAAKKEFDVDTLSKSELRMLLSVMEGELEARDLVIEA ..... ::: :: :.:..::::::::::::: KIAA14 GLKCDSADYQAFKMNLEKLSKPELLTLFSILEGELEARDLVIEA 10 20 30 40 70 80 90 100 110 KIAA17 LRARRKEVFIQERYGRFNLNDPFLALQRDYEA--GAGDKEKKPVCTNPLSILEAVMAHCK :.:.....::.::::..:..::..:::::.:. .: ::.::::::::::..:: .:: KIAA14 LKAQHRDTFIEERYGKYNISDPLMALQRDFETLKEKNDGEKQPVCTNPLSILKVVMKQCK 50 60 70 80 90 100 120 130 140 KIAA17 KMQERMSAQLAAAESRQKK------------------------------------LEMEK .::::: .::::::::..: ::.:: KIAA14 NMQERMLSQLAAAESRHRKVILDLEEERQRHAQDTAEGDDVTYMLEKERERLTQQLEFEK 110 120 130 140 150 160 150 160 170 180 190 200 KIAA17 LQLQALEQEHKKLAARLEEERGKNKQVVLMLVKECKQLSGKVIEEAQKLEDVMAKLEEEK :.. .:.:.:::...:::::...::. ::: :::. ..:. ::.:: .. :::.:: KIAA14 SQVKKFEKEQKKLSSQLEEERSRHKQLSSMLVLECKKATNKAAEEGQKAGELSLKLEKEK 170 180 190 200 210 220 210 220 230 240 250 260 KIAA17 KKTNELEEELSAEKRRSTEMEAQMEKQLSEFDTEREQLRAKLNREEAHTTDLKEEIDKMR .....:::::.::..:. . :::.:::::::: ::::::::::::: .: ::::..... KIAA14 SRVSKLEEELAAERKRGLQTEAQVEKQLSEFDIEREQLRAKLNREENRTKTLKEEMESLK 230 240 250 260 270 280 270 280 290 300 310 320 KIAA17 KMIEQLKRGSD-SKPSLSLPRKTKDRRLVSISVGTEGTVTRSVACQTDLVTENADHMKKL :....:. . . :.:. .: . . :: ...:: . :: :::. . : ... KIAA14 KIVKDLEASHQHSSPNEQLKKPVT----VSKGTATEPLMLMSVFCQTESFPAERTHGSNI 290 300 310 320 330 340 330 340 350 360 370 KIAA17 P-LTMPVKPSTGSPLVSANAKGSVCTSATMARPGIDRQASYGDLIGASVPAFPPPSA--- .: :. ..: : .. : .. :. . :. . .:: : KIAA14 AKMTNTGLPGPATPAYSYAKTNGHCDPEIQTT----RELTAGNNVENQVPPREKSVALAQ 350 360 370 380 390 380 390 400 410 420 KIAA17 NKIEENG--PSTGSTPDPTSSTPPLPSNAA---PPTAQTPGIAPQNSQAPPM------HS .: ::: : :: : : :: :... : .. . ... . ..: . : KIAA14 EKPVENGGCPVGIETPVPMPS--PLSSSGSSLSPSSTASSSLTSSPCSSPVLTKRLLGSS 400 410 420 430 440 450 430 440 450 460 470 480 KIAA17 LHSPCANTSLHPGLNPRIQAARFRFQGNANDPDQNGNTTQSPPSRDVSPTSRDNLVAKQL :: ..: . :.: :..::: .::..: : ::... :::::::.::: :: .:::: KIAA14 ASSPGYQSSYQVGINQRFHAARHKFQSQA-DQDQQASGLQSPPSRDLSPTLIDNSAAKQL 460 470 480 490 500 510 490 500 510 520 KIAA17 ARNTVTQALSRFTSPQAGAPSRPGVP-----------------PTGDVGTHPPVGRTS-- :::::::.:::::: :. : .: : : ::.. : :..: KIAA14 ARNTVTQVLSRFTSQQG--PIKPVSPNSSPFGTDYRNLANTANPRGDTSHSPTPGKVSSP 520 530 540 550 560 570 530 540 550 560 570 580 KIAA17 -------LKTHGVARVDRGNPPPIPPKKPGLSQTPSPPHPQLKVIIDSSRASNTGAKVDN .:. . :..::::::::::::::. .:: : :. :. :: : :. : KIAA14 LSPLSPGIKSPTIPRAERGNPPPIPPKKPGLTPSPSATTPLTKT--HSQAASLTTAE-DL 580 590 600 610 620 590 600 610 620 630 640 KIAA17 KTVASTPSSLPQGNRVINEENLPKSSSPQLPPKPSIDLTVAPAGCAVSALATSQVGAWPA . :. . . .:. : : :: :: KIAA14 ASSCSSNTVVANGKDV--ELLLPTSS 630 640 650 >>KIAA1223 ( 1089 res) pg00513 (1089 aa) initn: 473 init1: 288 opt: 349 Z-score: 154.5 bits: 41.0 E(): 0.0017 Smith-Waterman score: 349; 30.455% identity (63.182% similar) in 220 aa overlap (717-935:383-596) 690 700 710 720 730 740 KIAA17 ASGWSPSLTPLLMSGGPAPLAGRPTLLQQAAAQGNVTLLSMLLNEEGLDINYSCEDGHSA :..:.....:.:... : .... .:: . KIAA12 VEHLLDHGAEVNHEDVDGRTALSVAALCVPASKGHASVVSLLIDR-GAEVDHCDKDGMTP 360 370 380 390 400 410 750 760 770 780 790 800 KIAA17 LYSAAKNGHTDCVRLLLSAEAQVNAADKNGFTPLCAAAAQGHFECVELLISYDANINHAA : :: .::.: : ::: . :.:. .:.:: ::: :::..:: :. :. . : .. KIAA12 LLVAAYEGHVDVVDLLLEGGADVDHTDNNGRTPLLAAASMGHASVVNTLLFWGAAVDSID 420 430 440 450 460 470 810 820 830 840 850 860 KIAA17 DGGQTPLYLACKNGNKECIKLLLEAGTNRSVKTTDGWTPVHAAVDTGNVDSLKLLMYHRI . :.: : .: .:: : .. ::. : ... . ::::.: :. :. :. . . KIAA12 SEGRTVLSIASAQGNVEVVRTLLDRGLDENHRDDAGWTPLHMAAFEGH-----RLICEAL 480 490 500 510 520 870 880 890 900 910 920 KIAA17 PAHGNSFNEEESESSV-FDLDGGEESPEGISKPVVPADLINHANREGWTAAHIAASKGFK .: :: .... . : : . : . .. . . :.. . .: .: ..:: .: . KIAA12 IEQGARTNEIDNDGRIPFILASQEGHYDCVQILLENKSNIDQRGYDGRNALRVAALEGHR 530 540 550 560 570 580 930 940 950 960 970 980 KIAA17 NCLEILCRHGGLEPERRDKCNRTVHDVATDDCKHLLENLNALKIPLRISVGEIEPSNYGS . .:.: :: KIAA12 DIVELLFSHGADVNCKDADGRPTLYILALENQLTMAEYFLENGANVEASDAEGRTALHVS 590 600 610 620 630 640 1662 residues in 1 query sequences 1985843 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:15:43 2008 done: Thu Dec 18 15:15:44 2008 Total Scan time: 0.910 Total Display time: 0.080 Function used was FASTA [version 34.26.5 April 26, 2007]