# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/pj02374.fasta.huge -Q ../query/KIAA1750.ptfa ./tmplib.25089 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1750, 431 aa
 vs ./tmplib.25089 library

1987074 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 7.0363+/-0.00609; mu= 3.4776+/- 0.412
 mean_var=154.5433+/-37.284, 0's: 0 Z-trim: 2  B-trim: 0 in 0/40
 Lambda= 0.103169

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0721  ( 433 res)   hk01908                     ( 433)  787 128.6 7.3e-31


>>KIAA0721  ( 433 res)   hk01908                          (433 aa)
 initn: 993 init1: 523 opt: 787  Z-score: 645.9  bits: 128.6 E(): 7.3e-31
Smith-Waterman score: 1011;  42.889% identity (67.269% similar) in 443 aa overlap (11-430:16-432)

                    10        20        30        40        50     
KIAA17      AGSQRVFEAASAATMSGRSRGRKSSRAKNRGKGRAKARVRPAPDDAPRDPDPSQY
                      ... ::: . : :   :.. : .        ::: :  ::: .: 
KIAA07 RPLRRTRNSPSPTSLTSSKMSGLDGGNKLPLAQTGGLA--------APDHASGDPDRDQC
               10        20        30                40        50  

          60        70        80        90       100       110     
KIAA17 QSLGEDTQAAQVQAGAGWGGLEAAASAQLLRLGEEAACRLPLDCGLALRARAAGDHGQAA
       :.: :.:.:.::.:..: :.::..:        : .: . :.::: :::. .::..: ::
KIAA07 QGLREETEATQVMANTGGGSLETVA--------EGGASQDPVDCGPALRVPVAGSRGGAA
             60        70                80        90       100    

         120       130       140       150       160       170     
KIAA17 ARPGPGKAASLSERLAADTVFVGTAGTVGRPKNAPRVGNRRGPAGKKAPETCSTAGRGPQ
       .. :   :   .. : : .   .. .. .  ::. ..:. :::::.:: :.:...: : :
KIAA07 TKAGQEDAPPSTKGLEAAS---AAEAADSSQKNGCQLGEPRGPAGQKALEACGAGGLGSQ
          110       120          130       140       150       160 

         180                 190       200                  210    
KIAA17 VIAGGRQKK--------GAA--GENTSVSAGEEKK----EERDAG-----SGP--PATEG
       .: : . :.        .::   :. . .: ::::    :.. ::     . :  :  ..
KIAA07 MIPGKKAKEVTTKKRAISAAVEKEGEAGAAMEEKKVVQKEKKVAGGVKEETRPRAPKINN
             170       180       190       200       210       220 

          220       230       240       250       260       270    
KIAA17 SMDTLENVQLKLENMNAQADRAYLRLSRKFGQLRLQHLERRNHLIQNIPGFWGQAFQNHP
        ::.:: .. .: :.:::::::.:.: ::::..:  :..::. .::::::::  ::.:::
KIAA07 CMDSLEAIDQELSNVNAQADRAFLQLERKFGRMRRLHMQRRSFIIQNIPGFWVTAFRNHP
             230       240       250       260       270       280 

          280       290       300       310       320       330    
KIAA17 QLASFLNSQEKEVLSYLNSLEVEELGLARLGYKIKFYFDRNPYFQNKVLIKEYGCGPSGQ
       ::. ....:....: :. .::::::   : : :.:: :. ::::.:. :.:::    ::.
KIAA07 QLSPMISGQDEDMLRYMINLEVEELKHPRAGCKFKFIFQGNPYFRNEGLVKEYERRSSGR
             290       300       310       320       330       340 

          340       350       360         370       380       390  
KIAA17 VVSRSTPIQWLPGHDLQSLSQGNPENNR--SFFGWFSNHSSIESDKIVEIINEELWPNPL
       ::: ::::.:  :.: :.  . : :.:   :::.:::.:: .: :.:.:::. :::::::
KIAA07 VVSLSTPIRWHRGQDPQAHIHRNREGNTIPSFFNWFSDHSLLEFDRIAEIIKGELWPNPL
             350       360       370       380       390       400 

            400       410       420       430 
KIAA17 QFYLLSEGARVEKGKEKEGRQGPGKQPMETTQPGVSQSN
       :.::..:: :       .: .:: .::.:...    :: 
KIAA07 QYYLMGEGPR-------RGIRGPPRQPVESARSFRFQSG
             410              420       430   




431 residues in 1 query   sequences
1987074 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:15:25 2008 done: Thu Dec 18 15:15:26 2008
 Total Scan time:  0.410 Total Display time:  0.020

Function used was FASTA [version 34.26.5 April 26, 2007]