hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-11415843/chunk_1/iprscan-20080502-11415843.nocrc
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Query sequence: KIAA1750
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00956.9.fs Nucleosome assembly protein (NAP)               83.7    1.4e-22   1
PF00956.9.ls Nucleosome assembly protein (NAP)               80.7    4.3e-21   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00956.9.ls   1/1     216   404 ..     1   293 []    80.7  4.3e-21
PF00956.9.fs   1/1     262   404 ..   105   293 .]    83.7  1.4e-22

Alignments of top-scoring domains:
PF00956.9.ls: domain 1 of 1, from 216 to 404: score 80.7, E = 4.3e-21
                   *->keRieaLKnlQvehdelEakFyeEvlkLEqKYaklYqPlfeKRreII
                          + L n+Q ++ +++a++ +  l L +K+ +l+    e+R    
    KIAA1750   216    ---MDTLENVQLKLENMNAQADRAYLRLSRKFGQLRLQHLERR---- 255  

                   nGvvEPteeeiewkseeeesleEeeelvdEDgelaeeekakeaveeekee
                                                             ++      
    KIAA1750   256 ----------------------------------------NHLI------ 259  

                   eeEdpKGIPnFWLTalkNvdlvsemitEeDEpiLkyLkDIkvkesedGep
                          IP+FW  a+ N+++++  +   + ++L+yL+ ++v+e+    +
    KIAA1750   260 -----QNIPGFWGQAFQNHPQLASFLNSQEKEVLSYLNSLEVEELGL-AR 303  

                   sGFkLeFhFDsaNpYFtNkVLTKtYhlkseldpsDPfsFegpeiekaeGc
                    G+k+ F+FD  NpYF NkVL K+Y  +    ps       +  + + ++
    KIAA1750   304 LGYKIKFYFDR-NPYFQNKVLIKEYGCG----PS-------GQ-VVSRST 340  

                   eIdWkkgKnNlTvktikKKQkhKgrgtvRtitktvpndSFFNFFsPpkvp
                   +I+W +g +   + + +        g+       + n SFF +Fs + + 
    KIAA1750   341 PIQWLPGHD--LQSLSQ--------GNP------ENNRSFFGWFSNHSSI 374  

                   dEdeDqeeeldEDleelLelDyeIGeviRDrIIPrAVlyFt...geaie<
                   +                   ++ I e i + ++P+++++++ ++g+ +e 
    KIAA1750   375 E-------------------SDKIVEIINEELWPNPLQFYLlseGARVE  404  

                   -*
                     
    KIAA1750     -    -    

PF00956.9.fs: domain 1 of 1, from 262 to 404: score 83.7, E = 1.4e-22
                   *->IPnFWLTalkNvdlvsemitEeDEpiLkyLkDIkvkesedGepsGFk
                      IP+FW  a+ N+++++  +   + ++L+yL+ ++v+e+    + G+k
    KIAA1750   262    IPGFWGQAFQNHPQLASFLNSQEKEVLSYLNSLEVEELGL-ARLGYK 307  

                   LeFhFDsaNpYFtNkVLTKtYhlkseldpsDPfsFegpeiekaeGceIdW
                   + F+FD  NpYF NkVL K+Y  +    ps       +  + + +++I+W
    KIAA1750   308 IKFYFDR-NPYFQNKVLIKEYGCG----PS-------GQ-VVSRSTPIQW 344  

                   kkgKnNlTvktikKKQkhKgrgtvRtitktvpndSFFNFFsPpkvpdEde
                    +g +   + + +        g+       + n SFF +Fs + + +   
    KIAA1750   345 LPGHD--LQSLSQ--------GNP------ENNRSFFGWFSNHSSIE--- 375  

                   DqeeeldEDleelLelDyeIGeviRDrIIPrAVlyFt...geaie<-*
                                   ++ I e i + ++P+++++++ ++g+ +e   
    KIAA1750   376 ----------------SDKIVEIINEELWPNPLQFYLlseGARVE    404  

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