# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/pj02084.fasta.huge -Q ../query/KIAA1748.ptfa ./tmplib.25089 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1748, 758 aa vs ./tmplib.25089 library 1986747 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 10.4852+/-0.00865; mu= -10.0115+/- 0.583 mean_var=372.5181+/-91.434, 0's: 0 Z-trim: 8 B-trim: 16 in 1/39 Lambda= 0.066451 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1292 ( 595 res) hk05468(revised) ( 595) 365 49.1 1.5e-06 KIAA0946 ( 667 res) hj04787 ( 667) 313 44.2 5.1e-05 >>KIAA1292 ( 595 res) hk05468(revised) (595 aa) initn: 892 init1: 362 opt: 365 Z-score: 209.6 bits: 49.1 E(): 1.5e-06 Smith-Waterman score: 1060; 37.322% identity (54.274% similar) in 702 aa overlap (122-758:1-595) 100 110 120 130 140 150 KIAA17 IYNAIMFLFVLANFSMATFMDPGIFPRAEEDEDKEDDFRAPLYKTVEIKGIQVRMKWCAT ::::::::::::::.:...::::::::::: KIAA12 DEDKEDDFRAPLYKNVDVRGIQVRMKWCAT 10 20 30 160 170 180 190 200 210 KIAA17 CRFYRPPRCSHCSVCDNCVEEFDHHCPWVNNCIGRRNYRYFFLFLLSLTAHIMGVFGFGL :.:::::::::::::::::: KIAA12 CHFYRPPRCSHCSVCDNCVE---------------------------------------- 40 50 220 230 240 250 260 270 KIAA17 LYVLYHIEELSGVRTAVTMAVMCVAGLFFIPVAGLTGFHVVLVARGRTTNEQVTGKFRGG :::::::: KIAA12 ----------------------------------------------------VTGKFRGG 280 290 300 310 320 KIAA17 VNPFTNGCCNNVSRVLCSSPAPRYLGRPKKEKTIV-IRPPFLRPEVSD--GQITVKIMDN ::::: :::.:: .:::: ::::. .: . : ..:::::::. : . . ::. :: KIAA12 VNPFTRGCCGNVEHVLCSPLAPRYVVEPPRLPLAVSLKPPFLRPELLDRAAPLKVKLSDN 60 70 80 90 100 110 330 340 350 360 370 380 KIAA17 GIQGELRRTKSKGSLEITESQSADAEPPPPPKPDLSRYTG-LRTHLGLATNEDSSLLAKD :... : :.::::::. . . : :: ::: . . ... :.: .. :.. . . KIAA12 GLKAGLGRSKSKGSLDRLDEKPLDLGPPLPPKIEAGTFSSDLQTPRP-GSAESALSVQRT 120 130 140 150 160 170 390 400 410 420 430 440 KIAA17 SPPTPTMYKYRPGYSSSSTSAAMPHSSSAKLSRG-DSLKEPTSIAESSRHPSYRSEPSLE :::::.:::.::.. :. .: . .. : ::: : .. : .. :::::. KIAA12 SPPTPAMYKFRPAF---PTGPKVPFCGPGEQVPGPDSL---TLGDDNIRSLDFVSEPSLD 180 190 200 210 220 230 450 460 470 480 490 KIAA17 -----PESFR-----SPTFGKSFHFDPLSSGSRSSSLKSAQGTGFELGQLQSIRSEGTTS : ... :: .. : : .:.. :: :::... : . :: .:::: KIAA12 LPDYGPGGLHAAYPPSPPLSAS---DAFSGALRSLSLKASSRRGGDHVALQPLRSEGGPP 240 250 260 270 280 500 510 520 530 540 550 KIAA17 TSYKSL----ANQTRNGSLSYDSLLTPSDSPDFESVQAGPEPDPPLGYTSPFLSARLAQQ : ..:. : .:::::::::::.:. :: .. : : :: ::.: : KIAA12 TPHRSIFAPHALPNRNGSLSYDSLLNPG-SPGGHACPAHPAVGVA-GYHSPYLHPG-ATG 290 300 310 320 330 340 560 570 580 590 600 610 KIAA17 REAERHPR-LVPT-GPTHREPSPVRYDNLSRHIVASLQEREKLLRQSPPLPGREEEPGLG . :: . :. :: ::::::::::::: :.::.::: : .. : . . .: KIAA12 DPPRPLPRSFSPVLGPRPREPSPVRYDNLSRTIMASIQER-KDREERERLLRSQADSLFG 350 360 370 380 390 400 620 630 640 KIAA17 DSGIQSTPGS---------GHAPRTSS----SSDD--------SKRSPLGKTPLGR--PA :::. ..:.: ...:: . : :: . :.: .: :. . KIAA12 DSGVYDAPSSYSLQQASVLSEGPRGPALRYGSRDDLVAGPGFGGARNPALQTSLSSLSSS 410 420 430 440 450 460 650 660 670 680 690 KIAA17 VPRFGKPDG--LRGRGVGSPEPGPTAPYLG--RSMSYSSQKAQPGVSET------EEVAL : : . .. :.. ..: ::: : : :: . .. . ::. .. . ::. KIAA12 VSRAPRTSSSSLQADQASSNAPGPR-PSSGSHRSPARQGLPSPPGTPHSPSYAGPKAVAF 470 480 490 500 510 520 700 710 720 730 740 KIAA17 ------QP---LLTPKDEVQLKTTYSKSNGQPKSLGSASPGPGQP-PLSSPTRGG-VKKV .: : . .:. :::: :: ::: .:. .:. : : : .:::: :::: KIAA12 IHTDLPEPPPSLTVQRDHPQLKTPPSKLNGQSPGLARLGPATGPPGPSASPTRHTLVKKV 530 540 550 560 570 580 750 KIAA17 SGVGGTTYEISV :::::::::::: KIAA12 SGVGGTTYEISV 590 >>KIAA0946 ( 667 res) hj04787 (667 aa) initn: 353 init1: 235 opt: 313 Z-score: 182.0 bits: 44.2 E(): 5.1e-05 Smith-Waterman score: 327; 30.802% identity (56.118% similar) in 237 aa overlap (84-283:405-629) 60 70 80 90 100 KIAA17 PSKYVPVSAAAIFLVGATTLFFAFTCPGLSLYVSPAVPIYNAIMFLFV----LANFSMAT .::. ..: . :::. ::: :.: KIAA09 ATVQFLSKSFFDHSMHSALPLGIYLATKFWMYVTWFFWFWNDLNFLFIHLPFLAN-SVAL 380 390 400 410 420 430 110 120 130 140 150 160 KIAA17 FM--------DPGIFPRAEEDEDKEDDFRAPLYKTVEIKGIQVRMKWCATCRFYRPPRCS :. ::::. .::.. : . . .: .... . .:.:: . .: : . KIAA09 FYNFGKSWKSDPGIIKATEEQKKKT------IVELAETGSLDLSI-FCSTCLIRKPVRSK 440 450 460 470 480 170 180 190 200 210 KIAA17 HCSVCDNCVEEFDHHCPWVNNCIGRRNYRYF--FLFLLSLTAHIMGVFGFGLLYVLYHIE ::.::. :. .::::::::.::.: :.::: .::.: . : ..: . : : : KIAA09 HCGVCNRCIAKFDHHCPWVGNCVGAGNHRYFMGYLFFLLFMICWM-IYGC-ISYWGLHCE 490 500 510 520 530 540 220 230 240 250 260 KIAA17 EL---SGVRTAVTMAVMCVAGLFFIPVAGLTGFHVVLVAR------------GRTTNEQV .: : .:. . : .:.. . .. :: . :: : ::::.. KIAA09 TTYTKDGFWTYITQIATCSPWMFWMFLNSV--FHFMWVAVLLMCQMYQISCLGITTNERM 550 560 570 580 590 600 270 280 290 300 310 KIAA17 TGK----FRGGV----NPFTNGCCNNVSRVLCSSPAPRYLGRPKKEKTIVIRPPFLRPEV ... :. . .::..:: :. KIAA09 NARRYKHFKVTTTSIESPFNHGCVRNIIDFFEFRCCGLFRPVIVDWTRQYTIEYDQISGS 610 620 630 640 650 660 758 residues in 1 query sequences 1986747 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:15:20 2008 done: Thu Dec 18 15:15:21 2008 Total Scan time: 0.570 Total Display time: 0.040 Function used was FASTA [version 34.26.5 April 26, 2007]