# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/pj01304s1.fasta.huge -Q ../query/KIAA1742.ptfa ./tmplib.25089 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1742, 1301 aa
 vs ./tmplib.25089 library

1986204 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 7.6245+/-0.00639; mu= 5.4907+/- 0.430
 mean_var=218.2075+/-51.380, 0's: 0 Z-trim: 6  B-trim: 0 in 0/40
 Lambda= 0.086824

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 40, opt: 28, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1337  ( 1438 res)   fh16696                    (1438)  204 39.6  0.0046


>>KIAA1337  ( 1438 res)   fh16696                         (1438 aa)
 initn: 288 init1: 107 opt: 204  Z-score: 146.9  bits: 39.6 E(): 0.0046
Smith-Waterman score: 204;  31.206% identity (68.085% similar) in 141 aa overlap (409-549:530-667)

      380       390       400       410       420       430        
KIAA17 ELLRHFLVQDTVYPLLALVAIFFGMALYLRSLFLTLMVLLGVLGSLLVAFFLYQVAFRMA
                                     :.::... . ..  : :::.:::.:.: . 
KIAA13 EVRRTFNNDMLLAFISSSCIAALVYILTSCSVFLSFFGIASIGLSCLVALFLYHVVFGIQ
     500       510       520       530       540       550         

      440       450       460       470       480       490        
KIAA17 YFPFVNLAALLLLSSVCANHTLIFFDLWRLSKSQLPSGGLAQRVGRTMHHFGYLLLVSGL
       :. ..: .: ... .. .. ...:.. .: . ..: .  :  :. .:..  :   . ..:
KIAA13 YLGILNGVAAFVIVGIGVDDVFVFINTYRQA-THLEDPQL--RMIHTVQTAGKATFFTSL
     560       570       580       590          600       610      

      500       510       520       530       540       550        
KIAA17 TTSAAFYASYLSRLPAVRCLALFMGTAVLVHLALTLVWLPASAVLHERYLARGCARRARG
       ::.::. :. .:..:::. ..:::.  :      .:: .::.  :   :::         
KIAA13 TTAAAYAANVFSQIPAVHDFGLFMSLIVSCCWLAVLVTMPAALGLWSLYLAPLESSCQTS
        620       630       640       650       660       670      

      560       570       580       590       600       610        
KIAA17 RWEGSAPRRLLLALHRRLRGLRRAAAGTSRLLFQRLLPCGVIKFRYIWICWFAALAAGGA
                                                                   
KIAA13 CHQNCSRKTSLHFPGDVFATPEQVGGSPAQGPIPYLDDDIPLLEVEEEPVSLELGDVSLV
        680       690       700       710       720       730      




1301 residues in 1 query   sequences
1986204 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:15:06 2008 done: Thu Dec 18 15:15:07 2008
 Total Scan time:  0.780 Total Display time:  0.040

Function used was FASTA [version 34.26.5 April 26, 2007]