hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-11041984/chunk_1/iprscan-20080502-11041984.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1728 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00248 180.3 1.9e-49 10 SM00028 50.9 1.6e-10 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00248 1/10 679 711 .. 1 30 [] 3.0 1.9e+03 SM00248 2/10 715 746 .. 1 30 [] 0.3 4.3e+03 SM00248 3/10 750 779 .. 1 30 [] 25.3 0.0084 SM00248 4/10 823 852 .. 1 30 [] 5.6 8.4e+02 SM00248 5/10 861 890 .. 1 30 [] 19.6 0.43 SM00248 6/10 894 923 .. 1 30 [] 28.5 0.00095 SM00248 7/10 927 956 .. 1 30 [] 32.4 6.3e-05 SM00248 8/10 960 989 .. 1 30 [] 26.7 0.0032 SM00248 9/10 993 1022 .. 1 30 [] 29.3 0.00054 SM00248 10/10 1026 1055 .. 1 30 [] 9.7 2.3e+02 SM00028 1/3 1072 1105 .. 1 34 [] 6.4 93 SM00028 2/3 1119 1152 .. 1 34 [] 21.4 0.13 SM00028 3/3 1153 1186 .. 1 34 [] 23.1 0.039 Alignments of top-scoring domains: SM00248: domain 1 of 10, from 679 to 711: score 3.0, E = 1.9e+03 *->dGrTpLHlAaen...gnlevvklLldkgadina<-* +G ++ +n + n++v +lL+ ga++n+ KIAA1728 679 EGLSAALASLRNlytPNVKVSRLLILGGANVNY 711 SM00248: domain 2 of 10, from 715 to 746: score 0.3, E = 4.3e+03 *->dGrTpLHlAaen..gnlevvklLldkgadina<-* +++ l+++++ g++evv lLl+ ga ++ KIAA1728 715 VLNNAPILCVQShlGHEEVVTLLLEFGACLDG 746 SM00248: domain 3 of 10, from 750 to 779: score 25.3, E = 0.0084 *->dGrTpLHlAaengnlevvklLldkgadina<-* +G+T+L +Aa+ g++++v lL +kg+ ++ KIAA1728 750 NGMTALCYAAAAGHMKLVCLLTKKGVRVDH 779 SM00248: domain 4 of 10, from 823 to 852: score 5.6, E = 8.4e+02 *->dGrTpLHlAaengnlevvklLldkgadina<-* + +L Aa+ g+ +vv++Ll + ++ KIAA1728 823 ALQQALTAAASMGHSSVVQCLLGMEKEHEV 852 SM00248: domain 5 of 10, from 861 to 890: score 19.6, E = 0.43 *->dGrTpLHlAaengnlevvklLldkgadina<-* G T+L Aa +g lev++lLl +ga + KIAA1728 861 WGETALTAAAGRGKLEVCELLLGHGAAVSR 890 SM00248: domain 6 of 10, from 894 to 923: score 28.5, E = 0.00095 *->dGrTpLHlAaengnlevvklLldkgadina<-* G pL +Aa+ g+ +v+lLl++g d+n+ KIAA1728 894 RGVPPLFCAARQGHWQIVRLLLERGCDVNL 923 SM00248: domain 7 of 10, from 927 to 956: score 32.4, E = 6.3e-05 *->dGrTpLHlAaengnlevvklLldkgadina<-* +GrTpL++Aa++g+l++v++Ll+kga + KIAA1728 927 QGRTPLMVAACEGHLSTVEFLLSKGAALSS 956 SM00248: domain 8 of 10, from 960 to 989: score 26.7, E = 0.0032 *->dGrTpLHlAaengnlevvklLldkgadina<-* +G ++L +A+ +g+ vv++L+++ga i+ KIAA1728 960 EGLSALSWACLKGHRAVVQYLVEEGAAIDQ 989 SM00248: domain 9 of 10, from 993 to 1022: score 29.3, E = 0.00054 *->dGrTpLHlAaengnlevvklLldkgadina<-* +GrTpL lAa +g+ e+v +L++kga i+ KIAA1728 993 NGRTPLDLAAFYGDAETVLYLVEKGAVIEH 1022 SM00248: domain 10 of 10, from 1026 to 1055: score 9.7, E = 2.3e+02 *->dGrTpLHlAaengnlevvklLldkgadina<-* G+ pL A+ n +vv +Ll+kga + KIAA1728 1026 SGMRPLDRAIGCRNTSVVVALLRKGAKLGN 1055 SM00028: domain 1 of 3, from 1072 to 1105: score 6.4, E = 93 *->aealynlGnaylklgdydeAieyyekALeldPnn<-* + l Gn+ +k+g+ +eA + y+ AL+ P KIAA1728 1072 LQKLMEEGNVMYKKGKMKEAAQRYQYALRKFPRE 1105 SM00028: domain 2 of 3, from 1119 to 1152: score 21.4, E = 0.13 *->aealynlGnaylklgdydeAieyyekALeldPnn<-* + ++nl + +k +d+ +A+e+ +kALel P+ KIAA1728 1119 VSLYLNLSRCRRKTNDFGMAEEFASKALELKPKS 1152 SM00028: domain 3 of 3, from 1153 to 1186: score 23.1, E = 0.039 *->aealynlGnaylklgdydeAieyyekALeldPnn<-* +ea+y ++ a ++ ++ A++++++A++l P+n KIAA1728 1153 YEAFYARARAKRNSRQFVAALADLQEAVKLCPTN 1186 //