hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-10553446/chunk_1/iprscan-20080502-10553446.nocrc
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Query sequence: KIAA1723
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01852.10.fs START domain                                   245.4    8.7e-77   1
PF01852.10.ls START domain                                   247.3    2.9e-71   1
PF00620.17.fs RhoGAP domain                                  194.7    3.8e-57   1
PF00620.17.ls RhoGAP domain                                  196.6    5.6e-56   1
PF07647.7.fs SAM domain (Sterile alpha motif)                40.7    2.8e-11   1
PF07647.7.ls SAM domain (Sterile alpha motif)                42.7    1.2e-09   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF07647.7.ls   1/1     474   541 ..     1    72 []    42.7  1.2e-09
PF07647.7.fs   1/1     474   541 ..     1    72 []    40.7  2.8e-11
PF00620.17.fs   1/1    1118  1264 ..     1   155 []   194.7  3.8e-57
PF00620.17.ls   1/1    1118  1264 ..     1   155 []   196.6  5.6e-56
PF01852.10.fs   1/1    1349  1548 ..     1   244 []   245.4  8.7e-77
PF01852.10.ls   1/1    1349  1548 ..     1   244 []   247.3  2.9e-71

Alignments of top-scoring domains:
PF07647.7.ls: domain 1 of 1, from 474 to 541: score 42.7, E = 1.2e-09
                   *->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa
                           +++ ++WL++ g+ +qY++ ++d+ +  +  l  + ++++L 
    KIAA1723   474    KAEIEAKEACDWLRATGF-PQYAQLYEDFLFPIDISL-VKREHDFL- 517  

                   klalGitsvghRkkilkkiqelkqq<-*
                     +  i+++++R+  l+k+  +k +   
    KIAA1723   518 D-RDAIEALCRRLNTLNKCAVMKLE    541  

PF07647.7.fs: domain 1 of 1, from 474 to 541: score 40.7, E = 2.8e-11
                   *->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa
                           +++ ++WL++ g+ +qY++ ++d+ +  +  l  + ++++L 
    KIAA1723   474    KAEIEAKEACDWLRATGF-PQYAQLYEDFLFPIDISL-VKREHDFL- 517  

                   klalGitsvghRkkilkkiqelkqq<-*
                     +  i+++++R+  l+k+  +k +   
    KIAA1723   518 D-RDAIEALCRRLNTLNKCAVMKLE    541  

PF00620.17.fs: domain 1 of 1, from 1118 to 1264: score 194.7, E = 3.8e-57
                   *->PlivekCieflekrGLdtEGIyRvsGsksrikeLreafdrgedvdln
                      P+ +++  ++l++++Ld++G++R+sG ksri++Lr+   ++ + d++
    KIAA1723  1118    PQSIQQAMRYLRNHCLDQVGLFRKSGVKSRIQALRQ--MNEGAIDCV 1162 

                   dleeedvhvvAslLKlFLReLPePLltfelyeefieaaaksedeeerlea
                   + e ++ ++vA++LK+++R+LPePL+t++l e+f+  +++  ++++rl+a
    KIAA1723  1163 NYEGQSAYDVADMLKQYFRDLPEPLMTNKLSETFLQ-IYQYVPKDQRLQA 1211 

                   lrellrkLPpaNrdtLryLlahLnrVaqnsevNkMtahNLAivFgPtLlr
                   +++++++LP++Nr++L+ Ll++L+ V++  ++N+Mt+ NLA++ +P+L++
    KIAA1723  1212 IKAAIMLLPDENREVLQTLLYFLSDVTAAVKENQMTPTNLAVCLAPSLFH 1261 

                   ppdgdsad<-*
                        +++   
    KIAA1723  1262 -----LNT    1264 

PF00620.17.ls: domain 1 of 1, from 1118 to 1264: score 196.6, E = 5.6e-56
                   *->PlivekCieflekrGLdtEGIyRvsGsksrikeLreafdrgedvdln
                      P+ +++  ++l++++Ld++G++R+sG ksri++Lr+   ++ + d++
    KIAA1723  1118    PQSIQQAMRYLRNHCLDQVGLFRKSGVKSRIQALRQ--MNEGAIDCV 1162 

                   dleeedvhvvAslLKlFLReLPePLltfelyeefieaaaksedeeerlea
                   + e ++ ++vA++LK+++R+LPePL+t++l e+f+  +++  ++++rl+a
    KIAA1723  1163 NYEGQSAYDVADMLKQYFRDLPEPLMTNKLSETFLQ-IYQYVPKDQRLQA 1211 

                   lrellrkLPpaNrdtLryLlahLnrVaqnsevNkMtahNLAivFgPtLlr
                   +++++++LP++Nr++L+ Ll++L+ V++  ++N+Mt+ NLA++ +P+L++
    KIAA1723  1212 IKAAIMLLPDENREVLQTLLYFLSDVTAAVKENQMTPTNLAVCLAPSLFH 1261 

                   ppdgdsad<-*
                        +++   
    KIAA1723  1262 -----LNT    1264 

PF01852.10.fs: domain 1 of 1, from 1349 to 1548: score 245.4, E = 8.7e-77
                   *->elaeeaaqelvkmalsdepgWvkssetgrenengdevlqkfepsqvt
                      ++ +++++ l+k+++++++gWv++s    ++e+ + +++k+ +    
    KIAA1723  1349    HFLQDCVDGLFKEVKEKFKGWVSYS----TSEQAELSYKKV-S---- 1386 

                   kppGlkdsgeasRasgvVpmvlaFllveellddmey.raqWdkdvrciVs
                          +g ++R+++ V++v+a  ++ee+l+++++++++Wd d+     
    KIAA1723  1387 -------EGPPLRLWRSVIEVPA--VPEEILKRLLKeQHLWDVDLL---- 1423 

                   kaetlevissgeGGnrngalqyyvaelqaltplsPtRDfvfvRywrqdDd
                   + +++e ++s+      +++++yv++++a  p+++ RD+v++R+wr++  
    KIAA1723  1424 DSKVIEILDSQ------TEIYQYVQNSMA--PHPA-RDYVVLRTWRTN-- 1462 

                   HRFlrdgvyvivdvSvdspqkppeGPpssgvvRaerlpSGyliepcgngp
                      l++g ++++++Svd+++ p +G      vR+++l+S+yliepcg g+
    KIAA1723  1463 ---LPKGACALLLTSVDHDRAPVVG------VRVNVLLSRYLIEPCGPGK 1503 

                   ekskvtwvehvDlkgwlPvhwllrslvksgmafgaktwvatlqrlcek<-
                     sk+t++++vDl+g++P +w+++s+++ ++a+++k++ ++ ++++e+  
    KIAA1723  1504 --SKLTYMCRVDLRGHMP-EWYTKSFGHLCAAEVVKIRDSFSNQNTET   1548 

                   *
                    
    KIAA1723     -   -    

PF01852.10.ls: domain 1 of 1, from 1349 to 1548: score 247.3, E = 2.9e-71
                   *->elaeeaaqelvkmalsdepgWvkssetgrenengdevlqkfepsqvt
                      ++ +++++ l+k+++++++gWv++s    ++e+ + +++k+ +    
    KIAA1723  1349    HFLQDCVDGLFKEVKEKFKGWVSYS----TSEQAELSYKKV-S---- 1386 

                   kppGlkdsgeasRasgvVpmvlaFllveellddmey.raqWdkdvrciVs
                          +g ++R+++ V++v+a  ++ee+l+++++++++Wd d+     
    KIAA1723  1387 -------EGPPLRLWRSVIEVPA--VPEEILKRLLKeQHLWDVDLL---- 1423 

                   kaetlevissgeGGnrngalqyyvaelqaltplsPtRDfvfvRywrqdDd
                   + +++e ++s+      +++++yv++++a  p+++ RD+v++R+wr++  
    KIAA1723  1424 DSKVIEILDSQ------TEIYQYVQNSMA--PHPA-RDYVVLRTWRTN-- 1462 

                   HRFlrdgvyvivdvSvdspqkppeGPpssgvvRaerlpSGyliepcgngp
                      l++g ++++++Svd+++ p +G      vR+++l+S+yliepcg g+
    KIAA1723  1463 ---LPKGACALLLTSVDHDRAPVVG------VRVNVLLSRYLIEPCGPGK 1503 

                   ekskvtwvehvDlkgwlPvhwllrslvksgmafgaktwvatlqrlcek<-
                     sk+t++++vDl+g++P +w+++s+++ ++a+++k++ ++ ++++e+  
    KIAA1723  1504 --SKLTYMCRVDLRGHMP-EWYTKSFGHLCAAEVVKIRDSFSNQNTET   1548 

                   *
                    
    KIAA1723     -   -    

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