hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-10433905/chunk_1/iprscan-20080502-10433905.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1716 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00105 198.7 5.3e-55 1 SM00233 67.2 2.1e-15 1 SM00248 40.2 2.8e-07 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00233 1/1 272 368 .. 1 82 [] 67.2 2.1e-15 SM00105 1/1 406 528 .. 1 139 [] 198.7 5.3e-55 SM00248 1/2 672 701 .. 1 30 [] 25.6 0.0071 SM00248 2/2 705 734 .. 1 30 [] 14.6 14 Alignments of top-scoring domains: SM00233: domain 1 of 1, from 272 to 368: score 67.2, E = 2.1e-15 *->vikeGwLlkks...k.swkkryfvLfngvLlyyksk...kpkgsipL v++eG+L k+ ++ +++w +r+f + n++L+y k+ ++ + +L KIAA1716 272 VVMEGYLFKRAsnaFkTWNRRWFSIQNSQLVYQKKLkdaLTVVVDDL 318 sgcsvre.p......cFeivt.drtlllqAeseeereeWvealqsaiaka + csv++ ++ +++ cFe+ +++++ lqA+se+ r+ Wv+a q+ ia+a KIAA1716 319 RLCSVKPcEdierrfCFEVLSpTKSCMLQADSEKLRQAWVQAVQASIASA 368 <-* KIAA1716 - - SM00105: domain 1 of 1, from 406 to 528: score 198.7, E = 5.3e-55 *->eealqlLRsikpgNkkCfDCGavpnPtWaSvnlGvflCieCSGiHRs e lq+++s gN+ C DCG+ p+P+WaS+nlGv+lCieCSGiHRs KIAA1716 406 ESVLQRVQSVA-GNSQCGDCGQ-PDPRWASINLGVLLCIECSGIHRS 450 LfGvHiSkVnvRSltLDtWteeeLrllesckgGNenansfwesnlddfsl L GvH SkV RSltLD+W++ eL +l+ c++GN+++n+++e++ + + KIAA1716 451 L-GVHCSKV--RSLTLDSWEP-ELLKLM-CELGNSAVNQIYEAQCEGAGS 495 kpkdsdaaasvKCeddrqkyesfiaaKYeeklfrvdkesaee<-* ++++++ ++rq +e++i++KY+ek+f + k + + KIAA1716 496 RKPTAS--------SSRQDKEAWIKDKYVEKKF-LRKAPMAP 528 SM00248: domain 1 of 2, from 672 to 701: score 25.6, E = 0.0071 *->dGrTpLHlAaengnlevvklLldkgadina<-* +G+TpL A+ g+l v+++Ll++gad+n KIAA1716 672 EGKTPLVQAVLGGSLIVCEFLLQNGADVNQ 701 SM00248: domain 2 of 2, from 705 to 734: score 14.6, E = 14 *->dGrTpLHlAaengnlevvklLldkgadina<-* Gr pLH+A g+ v l+l++gad +a KIAA1716 705 RGRAPLHHATLLGRTGQVCLFLKRGADQHA 734 //