hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-10314036/chunk_1/iprscan-20080502-10314036.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1710 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 420.4 2.4e-123 12 PF00096.16.fs Zinc finger, C2H2 type 396.7 3.1e-116 12 PF01352.17.fs KRAB box 83.8 3.6e-23 1 PF01352.17.ls KRAB box 85.8 1.2e-22 1 PF01286.9.fs XPA protein N-terminal 47.3 1e-12 11 PF01096.9.fs Transcription factor S-II (TFIIS) 41.3 4.4e-12 10 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01352.17.fs 1/1 59 99 .. 1 41 [] 83.8 3.6e-23 PF01352.17.ls 1/1 59 99 .. 1 41 [] 85.8 1.2e-22 PF00096.16.fs 1/12 183 205 .. 1 24 [] 32.3 8.6e-07 PF00096.16.ls 1/12 183 205 .. 1 24 [] 34.2 4.1e-07 PF00096.16.fs 2/12 211 233 .. 1 24 [] 34.6 2.2e-07 PF00096.16.ls 2/12 211 233 .. 1 24 [] 36.6 8e-08 PF00096.16.ls 3/12 239 261 .. 1 24 [] 33.0 9.4e-07 PF00096.16.fs 3/12 239 261 .. 1 24 [] 31.1 1.7e-06 PF00096.16.fs 4/12 267 289 .. 1 24 [] 30.7 2.1e-06 PF00096.16.ls 4/12 267 289 .. 1 24 [] 32.7 1.2e-06 PF00096.16.fs 5/12 295 317 .. 1 24 [] 39.1 1.4e-08 PF00096.16.ls 5/12 295 317 .. 1 24 [] 41.1 3.6e-09 PF00096.16.fs 6/12 323 345 .. 1 24 [] 31.6 1.3e-06 PF00096.16.ls 6/12 323 345 .. 1 24 [] 33.5 6.6e-07 PF00096.16.ls 7/12 351 373 .. 1 24 [] 37.1 5.8e-08 PF00096.16.fs 7/12 351 373 .. 1 24 [] 35.1 1.7e-07 PF00096.16.ls 8/12 379 401 .. 1 24 [] 31.1 3.5e-06 PF00096.16.fs 8/12 379 401 .. 1 24 [] 29.2 5.1e-06 PF00096.16.ls 9/12 407 429 .. 1 24 [] 36.5 8.7e-08 PF00096.16.fs 9/12 407 429 .. 1 24 [] 34.5 2.4e-07 PF00096.16.ls 10/12 435 457 .. 1 24 [] 32.0 1.9e-06 PF00096.16.fs 10/12 435 457 .. 1 24 [] 30.1 3.1e-06 PF00096.16.fs 11/12 463 485 .. 1 24 [] 34.3 2.7e-07 PF00096.16.ls 11/12 463 485 .. 1 24 [] 36.3 1e-07 PF00096.16.fs 12/12 491 513 .. 1 24 [] 34.2 2.8e-07 PF00096.16.ls 12/12 491 513 .. 1 24 [] 36.2 1e-07 Alignments of top-scoring domains: PF01352.17.fs: domain 1 of 1, from 59 to 99: score 83.8, E = 3.6e-23 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* VtFeD a++ t+EEW+ Ld aQr+LYrdVM+ENy+n+vSl+ KIAA1710 59 VTFEDMAMYLTREEWRPLDAAQRDLYRDVMQENYGNVVSLD 99 PF01352.17.ls: domain 1 of 1, from 59 to 99: score 85.8, E = 1.2e-22 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* VtFeD a++ t+EEW+ Ld aQr+LYrdVM+ENy+n+vSl+ KIAA1710 59 VTFEDMAMYLTREEWRPLDAAQRDLYRDVMQENYGNVVSLD 99 PF00096.16.fs: domain 1 of 12, from 183 to 205: score 32.3, E = 8.6e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C+ +Cgk+Fs+ s+L+rH++tH KIAA1710 183 HICS-HCGKAFSQISDLNRHQKTH 205 PF00096.16.ls: domain 1 of 12, from 183 to 205: score 34.2, E = 4.1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C+ +Cgk+Fs+ s+L+rH++tH KIAA1710 183 HICS-HCGKAFSQISDLNRHQKTH 205 PF00096.16.fs: domain 2 of 12, from 211 to 233: score 34.6, E = 2.2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC +Cgk Fsr+s+L +H+rtH KIAA1710 211 YKCY-ECGKGFSRSSHLIQHQRTH 233 PF00096.16.ls: domain 2 of 12, from 211 to 233: score 36.6, E = 8e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC +Cgk Fsr+s+L +H+rtH KIAA1710 211 YKCY-ECGKGFSRSSHLIQHQRTH 233 PF00096.16.ls: domain 3 of 12, from 239 to 261: score 33.0, E = 9.4e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +CgksF r+s+L +H+ +H KIAA1710 239 YDCN-ECGKSFGRSSHLIQHQTIH 261 PF00096.16.fs: domain 3 of 12, from 239 to 261: score 31.1, E = 1.7e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +CgksF r+s+L +H+ +H KIAA1710 239 YDCN-ECGKSFGRSSHLIQHQTIH 261 PF00096.16.fs: domain 4 of 12, from 267 to 289: score 30.7, E = 2.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +CgksF+r s+L +H+rtH KIAA1710 267 HKCN-ECGKSFCRLSHLIQHQRTH 289 PF00096.16.ls: domain 4 of 12, from 267 to 289: score 32.7, E = 1.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +CgksF+r s+L +H+rtH KIAA1710 267 HKCN-ECGKSFCRLSHLIQHQRTH 289 PF00096.16.fs: domain 5 of 12, from 295 to 317: score 39.1, E = 1.4e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +CgksFsr+s+L +H+rtH KIAA1710 295 YECE-ECGKSFSRSSHLAQHQRTH 317 PF00096.16.ls: domain 5 of 12, from 295 to 317: score 41.1, E = 3.6e-09 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +CgksFsr+s+L +H+rtH KIAA1710 295 YECE-ECGKSFSRSSHLAQHQRTH 317 PF00096.16.fs: domain 6 of 12, from 323 to 345: score 31.6, E = 1.3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cg+ Fs +s+L +H r+H KIAA1710 323 YECN-ECGRGFSERSDLIKHYRVH 345 PF00096.16.ls: domain 6 of 12, from 323 to 345: score 33.5, E = 6.6e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cg+ Fs +s+L +H r+H KIAA1710 323 YECN-ECGRGFSERSDLIKHYRVH 345 PF00096.16.ls: domain 7 of 12, from 351 to 373: score 37.1, E = 5.8e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk Fs++s+L rH+r H KIAA1710 351 YKCD-ECGKNFSQNSDLVRHRRAH 373 PF00096.16.fs: domain 7 of 12, from 351 to 373: score 35.1, E = 1.7e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk Fs++s+L rH+r H KIAA1710 351 YKCD-ECGKNFSQNSDLVRHRRAH 373 PF00096.16.ls: domain 8 of 12, from 379 to 401: score 31.1, E = 3.5e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cg+ Fsr s+L +H+rtH KIAA1710 379 YHCN-ECGENFSRISHLVQHQRTH 401 PF00096.16.fs: domain 8 of 12, from 379 to 401: score 29.2, E = 5.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cg+ Fsr s+L +H+rtH KIAA1710 379 YHCN-ECGENFSRISHLVQHQRTH 401 PF00096.16.ls: domain 9 of 12, from 407 to 429: score 36.5, E = 8.7e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ CgksFsr+s+L +H+++H KIAA1710 407 YECN-ACGKSFSRSSHLITHQKIH 429 PF00096.16.fs: domain 9 of 12, from 407 to 429: score 34.5, E = 2.4e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ CgksFsr+s+L +H+++H KIAA1710 407 YECN-ACGKSFSRSSHLITHQKIH 429 PF00096.16.ls: domain 10 of 12, from 435 to 457: score 32.0, E = 1.9e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +C +sF +s+L +H+rtH KIAA1710 435 YECN-ECWRSFGERSDLIKHQRTH 457 PF00096.16.fs: domain 10 of 12, from 435 to 457: score 30.1, E = 3.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +C +sF +s+L +H+rtH KIAA1710 435 YECN-ECWRSFGERSDLIKHQRTH 457 PF00096.16.fs: domain 11 of 12, from 463 to 485: score 34.3, E = 2.7e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +Cgk F+++snL +H+r+H KIAA1710 463 YECV-QCGKGFTQSSNLITHQRVH 485 PF00096.16.ls: domain 11 of 12, from 463 to 485: score 36.3, E = 1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +Cgk F+++snL +H+r+H KIAA1710 463 YECV-QCGKGFTQSSNLITHQRVH 485 PF00096.16.fs: domain 12 of 12, from 491 to 513: score 34.2, E = 2.8e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +C ksFsr+s L +H+r+H KIAA1710 491 YECT-ECEKSFSRSSALIKHKRVH 513 PF00096.16.ls: domain 12 of 12, from 491 to 513: score 36.2, E = 1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +C ksFsr+s L +H+r+H KIAA1710 491 YECT-ECEKSFSRSSALIKHKRVH 513 //