hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-10163258/chunk_1/iprscan-20080502-10163258.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1701 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF04826.4.ls Protein of unknown function (DUF634) 551.0 1.1e-162 1 PF04826.4.fs Protein of unknown function (DUF634) 549.1 4.3e-162 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF04826.4.fs 1/1 325 567 .. 1 264 [] 549.1 4.3e-162 PF04826.4.ls 1/1 325 567 .. 1 264 [] 551.0 1.1e-162 Alignments of top-scoring domains: PF04826.4.fs: domain 1 of 1, from 325 to 567: score 549.1, E = 4.3e-162 *->rrpsrikkfafPykiDdiLsaeeLqKvLnLLesTeDPfIqevALitL r++++ik+fa+P+k+++++++ee++K++ LL+sT+DP+I+++A+i++ KIAA1701 325 REVNGIKPFACPCKMECYMDSEEFEKLVSLLKSTTDPLIHKIARIAM 371 GNNAaysfNQeiIReLGGvPIianlintrdPiikEKAliaLNNLSvNvEN G++++++f+Qe+I+e+G+v++i++l+++++P++++K++i+LN++S++ E+ KIAA1701 372 GVHNVHPFAQEFINEVGVVTLIESLLSFPSPEMRKKTVITLNPPSGD-ER 420 QrKIkvYvnqVCdDtmssrLNSAVQlaGLrLLTNMTvTNdYQHlLanSis QrKI+++v+++C++tms++LNS++Q++GL++L+++T+++++++++an++s KIAA1701 421 QRKIELHVKHMCKETMSFPLNSPGQQSGLKILGQLTTDFVHHYIVANYFS 470 dlFrLLslGNgkTKvqVLKLLlNlsENPaMtreLlsaqVpSsLlSLFNkk +lF+LLs+GN+kT+++VLKLLlN+sENP+++r++++++++++L+++FN+k KIAA1701 471 ELFHLLSSGNCKTRNLVLKLLLNMSENPTAARDMINMKALAALKLIFNQK 520 vakEiLlnaLtLFeNIndnlkaEgnlanqkeFskGSLFfLlkesgvCakK +ak++L++++++F+NI+++++ kGS+++++++s+ ++ KIAA1701 521 EAKANLVSGVAIFINIKEHIR------------KGSIVVVDHLSY---NT 555 irALasHHDleVKvKVi<-* ++A+++ eVK+ +i KIAA1701 556 LMAIFR----EVKE-II 567 PF04826.4.ls: domain 1 of 1, from 325 to 567: score 551.0, E = 1.1e-162 *->rrpsrikkfafPykiDdiLsaeeLqKvLnLLesTeDPfIqevALitL r++++ik+fa+P+k+++++++ee++K++ LL+sT+DP+I+++A+i++ KIAA1701 325 REVNGIKPFACPCKMECYMDSEEFEKLVSLLKSTTDPLIHKIARIAM 371 GNNAaysfNQeiIReLGGvPIianlintrdPiikEKAliaLNNLSvNvEN G++++++f+Qe+I+e+G+v++i++l+++++P++++K++i+LN++S++ E+ KIAA1701 372 GVHNVHPFAQEFINEVGVVTLIESLLSFPSPEMRKKTVITLNPPSGD-ER 420 QrKIkvYvnqVCdDtmssrLNSAVQlaGLrLLTNMTvTNdYQHlLanSis QrKI+++v+++C++tms++LNS++Q++GL++L+++T+++++++++an++s KIAA1701 421 QRKIELHVKHMCKETMSFPLNSPGQQSGLKILGQLTTDFVHHYIVANYFS 470 dlFrLLslGNgkTKvqVLKLLlNlsENPaMtreLlsaqVpSsLlSLFNkk +lF+LLs+GN+kT+++VLKLLlN+sENP+++r++++++++++L+++FN+k KIAA1701 471 ELFHLLSSGNCKTRNLVLKLLLNMSENPTAARDMINMKALAALKLIFNQK 520 vakEiLlnaLtLFeNIndnlkaEgnlanqkeFskGSLFfLlkesgvCakK +ak++L++++++F+NI+++++ kGS+++++++s+ ++ KIAA1701 521 EAKANLVSGVAIFINIKEHIR------------KGSIVVVDHLSY---NT 555 irALasHHDleVKvKVi<-* ++A+++ eVK+ +i KIAA1701 556 LMAIFR----EVKE-II 567 //