# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fj15353.fasta.huge -Q ../query/KIAA1700.ptfa ./tmplib.25089 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1700, 690 aa
 vs ./tmplib.25089 library

1986815 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 8.2084+/-0.00679; mu= -1.3648+/- 0.459
 mean_var=199.7938+/-48.970, 0's: 0 Z-trim: 2  B-trim: 5 in 1/39
 Lambda= 0.090737

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1298  ( 738 res)   fg04206                     ( 738)  244 44.8 3.4e-05
KIAA1725  ( 1042 res)   pf00950                    (1042)  210 40.5 0.00095


>>KIAA1298  ( 738 res)   fg04206                          (738 aa)
 initn: 265 init1: 212 opt: 244  Z-score: 185.2  bits: 44.8 E(): 3.4e-05
Smith-Waterman score: 245;  31.651% identity (55.046% similar) in 218 aa overlap (210-405:24-229)

     180       190       200       210       220          230      
KIAA17 ANIGPTRILPNLYLGCQRDVLNKELMQQNGIGYVLNASNTCPKPDFIP---ESHFLRVPV
                                     . :.::..      .:.:     : .::  
KIAA12        TMRCYLSWDRWTSPPLSSIIFISVDYILNVTREID--NFFPGLFAYHNIRV-Y
                      10        20        30          40         50

        240       250       260       270       280       290      
KIAA17 NDSFCEKILPWLDKSVDFIEKAKASNGCVLVHCLAGISRSATIAIAYIMKRMDMSLDEAY
       ..   . .  : ...  ::.::: ...  ::::  :.::::. .::: ::..   :..::
KIAA12 DEETTDLLAHW-NEAYHFINKAKRNHSKCLVHCKMGVSRSASTVIAYAMKEFGWPLEKAY
               60         70        80        90       100         

        300       310       320             330       340          
KIAA17 RFVKEKRPTISPNFNFLGQLLDYE------KKIKNQTGASGPKSKLKLLHLEKPNEP---
        .::.::    :: .:. :: .::      :. .:.   .   :.:.   .. :  :   
KIAA12 NYVKQKRSITRPNAGFMRQLSEYEGILDASKQRHNKLWRQQTDSSLQQ-PVDDPAGPGDF
     110       120       130       140       150        160        

       350       360       370       380            390            
KIAA17 VPAVSEGGQKSETPLSPPCADSATSEAAGQRPVHPA-----SVPSVPSVQP---SL--LE
       .: . .:  .:. :.     :.:.. . :  :  :      : : .:: .    ::  ::
KIAA12 LPETPDGTPESQLPF----LDDAAQPGLG--PPLPCCFRRLSDPLLPSPEDETGSLVHLE
      170       180           190         200       210       220  

       400       410       420       430       440       450       
KIAA17 DSPLVQALSGLHLSADRLEDSNKLKRSFSLDIKSVSYSASMAASLHGFSSSEDALEYYKP
       : :  .::                                                    
KIAA12 D-PEREALLEEAAPPAEVHRPARQPQQGSGLCEKDVKKKLEFGSPKGRSGSLLQVEETER
             230       240       250       260       270       280 

>>KIAA1725  ( 1042 res)   pf00950                         (1042 aa)
 initn: 248 init1: 189 opt: 210  Z-score: 159.2  bits: 40.5 E(): 0.00095
Smith-Waterman score: 223;  27.208% identity (53.004% similar) in 283 aa overlap (259-509:2-269)

      230       240       250       260       270       280        
KIAA17 SHFLRVPVNDSFCEKILPWLDKSVDFIEKAKASNGCVLVHCLAGISRSATIAIAYIMKRM
                                     : .. : ::::  :.::::. .::: ::..
KIAA17                              KKHGSKC-LVHCKMGVSRSASTVIAYAMKEY
                                             10        20        30

      290       300       310       320             330       340  
KIAA17 DMSLDEAYRFVKEKRPTISPNFNFLGQLLDYE------KKIKNQTGASGPKSKLKLLHLE
         .::.:: .:::.: . .:: .:. :: .:.      :. .:.   :   : :.  :  
KIAA17 GWNLDRAYDYVKERRTVTKPNPSFMRQLEEYQGILLASKQRHNKLWRSHSDSDLSDHH--
               40        50        60        70        80          

              350       360       370       380          390       
KIAA17 KPNEPV--PAVSEGGQKSETPLSPPCADSATSEAAGQRPVHPASVPS-VP--SVQPSLLE
          ::.  :.. : ..:. :  .   :.  : :.  . :. :. :   ::  . : .:  
KIAA17 ---EPICKPGL-ELNKKDITTSADQIAEVKTMES--HPPIPPVFVEHMVPQDANQKGLCT
          90        100       110         120       130       140  

       400        410       420       430       440       450      
KIAA17 DSPLV-QALSGLHLSADRLEDSNKLKRSFSLDIKSVSYSASMAASLHGFSSSEDALEYYK
          ..   ... .. : ..::  .:.     ::.. : .  .  :   ... . .    .
KIAA17 KERMICLEFTSREFHAGQIEDELNLN-----DINGCSSGCCLNESKFPLDNCHASKALIQ
            150       160            170       180       190       

        460       470                           480       490      
KIAA17 PSTTLDGTNKLCQFS------------------PVQELSE--QTPETSPDKEEASIPKKL
       :. . . .::. ...                  :..::.   . :  ::: :  :   . 
KIAA17 PGHVPEMANKFPDLTVEDLETDALKADMNVHLLPMEELTSPLKDPPMSPDPESPSPQPSC
       200       210       220       230       240       250       

        500       510       520       530       540       550      
KIAA17 QTARPSDSQSKRLHSVRTSSSGTAQRSLLSPLHRSGSVEDNYHTSFLFGLSTSQQHLTKS
       :: . :: .. :.                                               
KIAA17 QT-EISDFSTDRIDFFSALEKFVELSQETRSRSFSHSRMEELGGGRNESCRLSVVEVAPS
        260       270       280       290       300       310      




690 residues in 1 query   sequences
1986815 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:13:31 2008 done: Thu Dec 18 15:13:31 2008
 Total Scan time:  0.590 Total Display time:  0.030

Function used was FASTA [version 34.26.5 April 26, 2007]