hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-09233929/chunk_1/iprscan-20080502-09233929.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1670 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00755.10.fs Choline/Carnitine o-acyltransferase 741.8 4e-220 1 PF00755.10.ls Choline/Carnitine o-acyltransferase 502.2 5.5e-148 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00755.10.fs 1/1 189 597 .. 1 474 [. 741.8 4e-220 PF00755.10.ls 1/1 189 598 .] 1 662 [] 502.2 5.5e-148 Alignments of top-scoring domains: PF00755.10.fs: domain 1 of 1, from 189 to 597: score 741.8, E = 4e-220 *->sLPkLPVPaLedTldrYLesvkPllseeefertealvkeFsapggeG sLPkLPVP++ +T++rYLesv+Pll++ee++r+e l+keF++ + + KIAA1670 189 SLPKLPVPRVSATIQRYLESVRPLLDDEEYYRMELLAKEFQD--KTA 233 ekLQeyLlerakktksnkedNWlsewWldyaYlagRdvpLpvNSspgshv ++LQ+yL+++++++ +N++s+wW++y+Yl+gR +pL+vNS++ + KIAA1670 234 PRLQKYLVLKSWWA-----SNYVSDWWEEYIYLRGR-SPLMVNSNY---Y 274 vfpkhdfpdtyndQlrrAarlihgilsfkrlldreelPEVFHlNPkpeta v++ +++++t ++Q++r +++ih++++++r+ldree+ kp++a KIAA1670 275 VMDLVLIKNT-DVQAARLGNIIHAMIMYRRKLDREEI--------KPVMA 315 lGrlikflPSLSWyGAvlkktPLcMnQYyrlFnscRiPGkkkDnqDslql lG P+c++Q++r+Fn++RiPGk+ +D lq+ KIAA1670 316 LG-----------------IVPMCSYQMERMFNTTRIPGKD---TDVLQH 345 yskskneGkcpeHvvVlcrGqfykldvldsdngklLspeeiekqLakIls s+s+ Hv+V+++G+f+kl+++++ +lL+p+++e+q+++Il+ KIAA1670 346 LSDSR-------HVAVYHKGRFFKLWLYEG--ARLLKPQDLEMQFQRILD 386 dssksqpkeapiGaLTsepRdeWAkaRqkLfkdnkeNkesLekIesAlFv d s++qp+e++++aLT+++R+eWA+aRq++f+++k Nk+ Le+Ie+A+F+ KIAA1670 387 DPSPPQPGEEKLAALTAGGRVEWAQARQAFFSSGK-NKAALEAIERAAFF 435 vCLDddspidyepvgeeekktsmlsglhggglhsifgdglNRWfDKslql v+LD++s+ ++++e+ +++ls++ + +lh g+++NRWfDKs++l KIAA1670 436 VALDEESY----SYDPED--EASLSLYGKALLH---GNCYNRWFDKSFTL 476 IvsknGstGlnaEHSpaDGppvvhLmenvykvdeqilksnvteeglpvgs I++knG+ GlnaEH++aD+p+++hL+e+v+ d+ +l+++ e+g++ g+ KIAA1670 477 ISFKNGQLGLNAEHAWADAPIIGHLWEFVLGTDSFHLGYT--ETGHCLGK 524 psandkkslplPekLeFeitpelqsdIekAkekfdklisdLdlvvlqFtn p++ +l++P++L+++i+ ++q++I+++++++++l++d++l+++qF + KIAA1670 525 PNP----ALAPPTRLQWDIPKQCQAVIKSSYQVAKALADDVELYCFQFLP 570 FGKgfiKkcklSPDaFIQlAlQLAyYr<-* FGKg+iKkc++SPDaF+Q+AlQLA++r KIAA1670 571 FGKGLIKKCRTSPDAFVQIALQLAHFR 597 PF00755.10.ls: domain 1 of 1, from 189 to 598: score 502.2, E = 5.5e-148 *->sLPkLPVPaLedTldrYLesvkPllseeefertealvkeFsapggeG sLPkLPVP++ +T++rYLesv+Pll++ee++r+e l+keF++ + + KIAA1670 189 SLPKLPVPRVSATIQRYLESVRPLLDDEEYYRMELLAKEFQD--KTA 233 ekLQeyLlerakktksnkedNWlsewWldyaYlagRdvpLpvNSspgshv ++LQ+yL+++++++ +N++s+wW++y+Yl+gR +pL+vNS++ + KIAA1670 234 PRLQKYLVLKSWWA-----SNYVSDWWEEYIYLRGR-SPLMVNSNY---Y 274 vfpkhdfpdtyndQlrrAarlihgilsfkrlldreelPEVFHlNPkpeta v++ +++++t ++Q++r +++ih++++++r+ldree+ kp++a KIAA1670 275 VMDLVLIKNT-DVQAARLGNIIHAMIMYRRKLDREEI--------KPVMA 315 lGrlikflPSLSWyGAvlkktPLcMnQYyrlFnscRiPGkkkDnqDslql lG P+c++Q++r+Fn++RiPGk+ +D lq+ KIAA1670 316 LG-----------------IVPMCSYQMERMFNTTRIPGKD---TDVLQH 345 yskskneGkcpeHvvVlcrGqfykldvldsdngklLspeeiekqLakIls s+s+ Hv+V+++G+f+kl+++++ +lL+p+++e+q+++Il+ KIAA1670 346 LSDSR-------HVAVYHKGRFFKLWLYEG--ARLLKPQDLEMQFQRILD 386 dssksqpkeapiGaLTsepRdeWAkaRqkLfkdnkeNkesLekIesAlFv d s++qp+e++++aLT+++R+eWA+aRq++f+++k Nk+ Le+Ie+A+F+ KIAA1670 387 DPSPPQPGEEKLAALTAGGRVEWAQARQAFFSSGK-NKAALEAIERAAFF 435 vCLDddspidyepvgeeekktsmlsglhggglhsifgdglNRWfDKslql v+LD++s+ ++++e+ +++ls++ + +lh g+++NRWfDKs++l KIAA1670 436 VALDEESY----SYDPED--EASLSLYGKALLH---GNCYNRWFDKSFTL 476 IvsknGstGlnaEHSpaDGppvvhLmenvykvdeqilksnvteeglpvgs I++knG+ GlnaEH++aD+p+++hL+e+v+ d+ +l+++ e+g++ g+ KIAA1670 477 ISFKNGQLGLNAEHAWADAPIIGHLWEFVLGTDSFHLGYT--ETGHCLGK 524 psandkkslplPekLeFeitpelqsdIekAkekfdklisdLdlvvlqFtn p++ +l++P++L+++i+ ++q++I+++++++++l++d++l+++qF + KIAA1670 525 PNP----ALAPPTRLQWDIPKQCQAVIKSSYQVAKALADDVELYCFQFLP 570 FGKgfiKkcklSPDaFIQlAlQLAyYrylyGkfvpTYEsASTRmFlhGRT FGKg+iKkc++SPDaF+Q+AlQLA++r KIAA1670 571 FGKGLIKKCRTSPDAFVQIALQLAHFR----------------------- 597 ETiRSvTtesleFVqAMldekpsaskeekrqLLkkAckkHvqytkeamtG KIAA1670 - -------------------------------------------------- - kGiDRHLfgLkllakeWYlglesPFPLelFlDpsyllstsfvlSqtnstS + KIAA1670 598 ---------------G---------------------------------- 598 edqvptktdigggFGPVvdDGYGicYniqGneriffhISsfsScpeTdad KIAA1670 - -------------------------------------------------- - rFakyLekALldmkd<-* KIAA1670 - --------------- - //