hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-09170257/chunk_1/iprscan-20080502-09170257.nocrc
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Query sequence: KIAA1666
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF07653.7.ls Variant SH3 domain                             167.9    2.4e-47   3
PF07653.7.fs Variant SH3 domain                             162.3      4e-46   3
PF00018.18.fs SH3 domain                                      36.7    2.9e-09   2
PF00018.18.ls SH3 domain                                      38.3    2.5e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00018.18.fs   1/2     199   261 ..     1    59 []    36.3  3.8e-09
PF00018.18.ls   1/1     199   261 ..     1    59 []    38.3  2.5e-08
PF07653.7.ls   1/3     200   261 ..     1    69 []    46.3  9.9e-11
PF07653.7.fs   1/3     200   261 ..     1    69 []    44.4  3.8e-12
PF07653.7.fs   2/3     820   882 ..     1    69 []    58.7  2.9e-16
PF07653.7.ls   2/3     820   882 ..     1    69 []    60.5    5e-15
PF07653.7.ls   3/3     937   998 ..     1    69 []    61.1  3.3e-15
PF07653.7.fs   3/3     937   998 ..     1    69 []    59.2    2e-16

Alignments of top-scoring domains:
PF00018.18.fs: domain 1 of 2, from 199 to 261: score 36.3, E = 3.8e-09
                   *->kkvvALYDYeare......sdELsFkkGDvitvleksddpgWWkgrl
                      k++ A Y Y++ e++++++++EL+++ GD i++  + d++g ++g+l
    KIAA1666   199    KIFMAQYNYNPFEgpndhpEGELPLTAGDYIYIFGDMDEDGFYEGEL 245  

                   kgtgGkeGliPsNYVepv<-*
                   ++  G++Gl+PsN+Ve +   
    KIAA1666   246 DD--GRRGLVPSNFVEQI    261  

PF00018.18.ls: domain 1 of 1, from 199 to 261: score 38.3, E = 2.5e-08
                   *->kkvvALYDYeare......sdELsFkkGDvitvleksddpgWWkgrl
                      k++ A Y Y++ e++++++++EL+++ GD i++  + d++g ++g+l
    KIAA1666   199    KIFMAQYNYNPFEgpndhpEGELPLTAGDYIYIFGDMDEDGFYEGEL 245  

                   kgtgGkeGliPsNYVepv<-*
                   ++  G++Gl+PsN+Ve +   
    KIAA1666   246 DD--GRRGLVPSNFVEQI    261  

PF07653.7.ls: domain 1 of 3, from 200 to 261: score 46.3, E = 9.9e-11
                   *->ygraiedyvaAtdknenl.eeeeLslkkGdvvkVidvggskdddgww
                       + a  +y++   +++n + e+eL l++Gd ++++   g++d dg++
    KIAA1666   200    IFMAQYNYNP--FEGPNDhPEGELPLTAGDYIYIF---GDMDEDGFY 241  

                   egeslggGrrrRGlvPssaveel<-*
                   ege+ ++Grr  GlvPs++ve +   
    KIAA1666   242 EGEL-DDGRR--GLVPSNFVEQI    261  

PF07653.7.fs: domain 1 of 3, from 200 to 261: score 44.4, E = 3.8e-12
                   *->ygraiedyvaAtdknenl.eeeeLslkkGdvvkVidvggskdddgww
                       + a  +y++   +++n + e+eL l++Gd ++++   g++d dg++
    KIAA1666   200    IFMAQYNYNP--FEGPNDhPEGELPLTAGDYIYIF---GDMDEDGFY 241  

                   egeslggGrrrRGlvPssaveel<-*
                   ege+ ++Grr  GlvPs++ve +   
    KIAA1666   242 EGEL-DDGRR--GLVPSNFVEQI    261  

PF07653.7.fs: domain 2 of 3, from 820 to 882: score 58.7, E = 2.9e-16
                   *->ygraiedyvaAtdknenl..eeeeLslkkGdvvkVidvggskdddgw
                      +++a+ dy++   +++nl+ +eeeL ++k ++++V+   gs+d +++
    KIAA1666   820    VFVALSDYNP-LVMSANLkaAEEELVFQKKQLLRVW---GSQDTHDF 862  

                   wegeslggGrrrRGlvPssaveel<-*
                   ++ e+  ++++  G +P ++v+e+   
    KIAA1666   863 YLSEC--NRQV--GNIPGCLVAEM    882  

PF07653.7.ls: domain 2 of 3, from 820 to 882: score 60.5, E = 5e-15
                   *->ygraiedyvaAtdknenl..eeeeLslkkGdvvkVidvggskdddgw
                      +++a+ dy++   +++nl+ +eeeL ++k ++++V+   gs+d +++
    KIAA1666   820    VFVALSDYNP-LVMSANLkaAEEELVFQKKQLLRVW---GSQDTHDF 862  

                   wegeslggGrrrRGlvPssaveel<-*
                   ++ e+  ++++  G +P ++v+e+   
    KIAA1666   863 YLSEC--NRQV--GNIPGCLVAEM    882  

PF07653.7.ls: domain 3 of 3, from 937 to 998: score 61.1, E = 3.3e-15
                   *->ygraiedyvaAtdknenl.eeeeLslkkGdvvkVidvggskdddgww
                       ++a  dy++  d + +++++++L+l++Gdvv V+   g +dd g++
    KIAA1666   937    IMIAALDYDP-GDGQMGGqGKGRLALRAGDVVMVY---GPMDDQGFY 979  

                   egeslggGrrrRGlvPssaveel<-*
                   +ge+  gG+r  GlvP++++ ++   
    KIAA1666   980 YGEL--GGHR--GLVPAHLLDHM    998  

PF07653.7.fs: domain 3 of 3, from 937 to 998: score 59.2, E = 2e-16
                   *->ygraiedyvaAtdknenl.eeeeLslkkGdvvkVidvggskdddgww
                       ++a  dy++  d + +++++++L+l++Gdvv V+   g +dd g++
    KIAA1666   937    IMIAALDYDP-GDGQMGGqGKGRLALRAGDVVMVY---GPMDDQGFY 979  

                   egeslggGrrrRGlvPssaveel<-*
                   +ge+  gG+r  GlvP++++ ++   
    KIAA1666   980 YGEL--GGHR--GLVPAHLLDHM    998  

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