hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-08560329/chunk_1/iprscan-20080502-08560329.nocrc
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Query sequence: KIAA1653
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01619.8.fs Proline dehydrogenase                          220.1    4.5e-63   1
PF01619.8.ls Proline dehydrogenase                            7.2    3.7e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01619.8.ls   1/1       1   193 []     1   379 []     7.2  3.7e-08
PF01619.8.fs   1/1      52   193 .]   150   296 ..   220.1  4.5e-63

Alignments of top-scoring domains:
PF01619.8.ls: domain 1 of 1, from 1 to 193: score 7.2, E = 3.7e-08
                   *->llgtvflfltalGrpllklavseamrlmgrqfvtGetiqqaiktvkr
                        ++  +   +++r+ ++l+                  q a +  +r
    KIAA1653     1    --RGCYSGWMSCPRRAVPLG------------------QRAGALGTR 27   

                   leelisegfilsvdmLGvadrkevkEavltaadAaayveaylqaihaigk
                   +          +  +L                                  
    KIAA1653    28 DS--------CRRGHLP--------------------------------- 36   

                   asklskifsvPgistklseLslkysEPEPLsleeerfelvmeellprlre
                     ++             + +s++ +     +    +              
    KIAA1653    37 -HLS-------------NSCSHSPT-----PCASQK-------------- 53   

                   laekAqelgvavtiDaEetdrleliDYmYldifkelmfdpenkgregvgn
                       A+e+gv++++DaE+t+++++i    +++++e m++++n+++  ++n
    KIAA1653    54 ----ATEMGVRLMVDAEQTYFQPAI----SRLTLE-MQRKFNVEKLLIFN 94   

                   viQAYLrragedidalvalAkregrklgvRLVKGAYwdsErkRAqvkGye
                   ++Q+YL++a+++++++++lA reg+++g++ V+GAY  +Er+ A+++Gye
    KIAA1653    95 TYQCYLKDAYDNVTLDMELAHREGWCFGAKPVRGAYLAQERACAAEIGYE 144  

                   dppvftdkattdmnyqcllrlllegrdykkiypmvAsHNadtvafvlqla
                   dp+++ ++at++m+++cl+++l+e+++++k ++mvAsHN+dtv+f+l++ 
    KIAA1653   145 DPINPMYEATNTMYHRCLDYVLEELKHNAKAKVMVASHNEDTVRFALRR- 193  

                   kelgiskadgqfeFqqLyGMgdqlsfeLvkagaDiGKLaynvrkYaPyGp
                                                                     
    KIAA1653     - -------------------------------------------------- -    

                   vAHFeellaYLvRRLlENganssFvnkerdlk<-*
                                                      
    KIAA1653     - --------------------------------    -    

PF01619.8.fs: domain 1 of 1, from 52 to 193: score 220.1, E = 4.5e-63
                   *->ekAqelgvavtiDaEetdrleliDYmYldifkelmfdpenkgregvg
                      +kA+e+gv++++DaE+t+++++i    +++++e m++++n+++  ++
    KIAA1653    52    QKATEMGVRLMVDAEQTYFQPAI----SRLTLE-MQRKFNVEKLLIF 93   

                   nviQAYLrragedidalvalAkregrklgvRLVKGAYwdsErkRAqvkGy
                   n++Q+YL++a+++++++++lA reg+++g++ V+GAY  +Er+ A+++Gy
    KIAA1653    94 NTYQCYLKDAYDNVTLDMELAHREGWCFGAKPVRGAYLAQERACAAEIGY 143  

                   edppvftdkattdmnyqcllrlllegrdykkiypmvAsHNadtvafvlql
                   edp+++ ++at++m+++cl+++l+e+++++k ++mvAsHN+dtv+f+l++
    KIAA1653   144 EDPINPMYEATNTMYHRCLDYVLEELKHNAKAKVMVASHNEDTVRFALRR 193  

                   <-*
                      
    KIAA1653     -     -    

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