hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-08082287/chunk_1/iprscan-20080502-08082287.nocrc
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Query sequence: KIAA1625
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00119                                                 544.9   3.3e-159   1
SM00456                                                  98.7    6.7e-25   2
SM00239                                                  65.8    5.4e-15   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00239    1/1     116   219 ..     1    92 []    65.8  5.4e-15
SM00456    1/2     337   369 ..     1    34 []    40.9  1.7e-07
SM00456    2/2     409   441 ..     1    34 []    57.8  1.4e-12
SM00119    1/1     520   859 .]     1   407 []   544.9 3.3e-159

Alignments of top-scoring domains:
SM00239: domain 1 of 1, from 116 to 219: score 65.8, E = 5.4e-15
                   *->tLtvkiisArnLp........DPYVkvs........kTkvvkktlsg
                      ++++++++A+nL +++  + +DP++k+  +++++ + T +vk+tl  
    KIAA1625   116    KIRLTVLCAKNLAkkdffrlpDPFAKIVvdgsgqchSTDTVKNTL-- 160  

                   fNPvWnEesetFeFevpp.s.LeieVyDk.........dfiGrvtippnn
                     P+Wn+   +++++v  +++++i+V+++++ +++ +  f+G+v++    
    KIAA1625   161 -DPKWNQ---HYDLYVGKtDsITISVWNHkkihkkqgaGFLGCVRLL--- 203  

                   ahqhsadglihlsell.ggrh.kl<-*
                           ++ +s+l++ g ++     
    KIAA1625   204 --------SNAISRLKdTGYQrLD    219  

SM00456: domain 1 of 2, from 337 to 369: score 40.9, E = 1.7e-07
                   *->plPpgWeerkdpdsGrpYYyNheTketqWekPre<-*
                       lP+g e+r++ + G++Y+ +++T+ ++W +Pr    
    KIAA1625   337    ELPEGYEQRTTVQ-GQVYFLHTQTGVSTWHDPRI    369  

SM00456: domain 2 of 2, from 409 to 441: score 57.8, E = 1.4e-12
                   *->plPpgWeerkdpdsGrpYYyNheTketqWekPre<-*
                      plPpgWe+r + + Gr+Y+++h++++tq+++Pr+   
    KIAA1625   409    PLPPGWEVRSTVS-GRIYFVDHNNRTTQFTDPRL    441  

SM00119: domain 1 of 1, from 520 to 859: score 544.9, E = 3.3e-159
                   *->nsspddLkkrskeaLeIefvvnehgvgEeglDgGGvtrEFffllske
                      ++ p+dLkkr    L+++f      +gEeglD+GGv rE++ ll++e
    KIAA1625   520    KMRPKDLKKR----LMVKF------RGEEGLDYGGVAREWLYLLCHE 556  

                   lfnptdygLFryspndnaeksktiYigrlrylLfpnPsagfaneehlaav
                   ++np +ygLF ys ++              y L++nP + + n++hl+  
    KIAA1625   557 MLNP-YYGLFQYSTDNI-------------YMLQINPDSSI-NPDHLS-- 589  

                   yFrfiGrvlGkAlyenrllDlrFarpFyKkLLgkpkgtdvtlhDleslDP
                   yF+f+Gr++G+A++++ ++   F+ pFyK+LLgkp    + l+Dles+DP
    KIAA1625   590 YFHFVGRIMGLAVFHGHYINGGFTVPFYKQLLGKP----IQLSDLESVDP 635  

                   elyksLvwLilvrrKleleeDlseeskslenditeveldmaLtFsivles
                   el+ksLvw+                   lendit v ld   tF  v+++
    KIAA1625   636 ELHKSLVWI-------------------LENDITPV-LD--HTF-CVEHN 662  

                   dfgevkvvELkpGGsnipVTeeNkkEYVhlvieyrlnkgvekqleAFreG
                    fg   ++ELkp+G+n+pVTeeNkkEYV+l++++r+ +g+e q+ A+ +G
    KIAA1625   663 AFGRILQHELKPNGRNVPVTEENKKEYVRLYVNWRFMRGIEAQFLALQKG 712  

                   FseVipeelLrylFdeeELeLLicGleeeidvddLksnTeyrggYtensq
                   F+e+ip++lL+  Fd++ELeL+i+Gl   id++d+ksnT+ + +  ++s 
    KIAA1625   713 FNELIPQHLLK-PFDQKELELIIGGLD-KIDLNDWKSNTRLK-HCVADSN 759  

                   tirfkkwFWevvesFtneerrkLLqFVTGssrlPASvgGFaaLsps...N
                   ++   +wFW++ve F+ e r++LLqFVTGs r+P  ++GF+aL++s++  
    KIAA1625   760 IV---RWFWQAVETFDEERRARLLQFVTGSTRVP--LQGFKALQGStgaA 804  

                   GpqkFtIrkagsetlsdddrLPtAhTCfNrLkLPpYsSkeiLreKLLlAI
                   Gp+ FtI+  ++     +d LP AhTCfNr+++PpY+S+e+L+eKLL+A+
    KIAA1625   805 GPRLFTIHLIDA----NTDNLPKAHTCFNRIDIPPYESYEKLYEKLLTAV 850  

                   negRiggeGFgls<-*
                   +e    + GF  +   
    KIAA1625   851 EE----TCGFAVE    859  

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