hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-08032569/chunk_1/iprscan-20080502-08032569.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA1622
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02985.12.ls HEAT repeat                                     88.4    2.1e-23   8
PF02985.12.fs HEAT repeat                                     73.1    1.7e-19   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02985.12.ls   3/8     226   262 ..     1    36 []    24.1  0.00047
PF02985.12.ls   4/8     265   301 ..     1    36 []    23.1   0.0009
PF02985.12.ls   5/8     411   446 ..     1    36 []    19.5    0.012

Alignments of top-scoring domains:
PF02985.12.ls: domain 3 of 8, from 226 to 262: score 24.1, E = 0.00047
                   *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-*
                       +i  e+lpl+ +l++D ++eVR   ++ L ++a+ +   
    KIAA1622   226    HtIKREILPLVKSLCQDVEYEVRSCMCRQLENIAQGI    262  

PF02985.12.ls: domain 4 of 8, from 265 to 301: score 23.1, E = 0.0009
                   *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-*
                      e + + +lp l++l +D+ ++VR+aA+e+L++l++++   
    KIAA1622   265    ElTKSVVLPELIELSRDEGSSVRLAAFETLVNLLDIF    301  

PF02985.12.ls: domain 5 of 8, from 411 to 446: score 19.5, E = 0.012
                   *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-*
                      + ++ el  +++ l++Dp+  VR++ a ++ ++++ l   
    KIAA1622   411    NfHM-ELYSTFFCLCHDPEVPVRYTIAICFYEVSKLL    446  

//