hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-07532070/chunk_1/iprscan-20080502-07532070.nocrc
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Query sequence: KIAA1616
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
PF00520.21.fs Ion transport protein                          46.3    1.3e-12   1
PF00520.21.ls Ion transport protein                          48.1    2.7e-11   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
PF00520.21.fs   1/1     214   422 ..     1   224 []    46.3  1.3e-12
PF00520.21.ls   1/1     214   422 ..     1   224 []    48.1  2.7e-11

Alignments of top-scoring domains:
PF00520.21.fs: domain 1 of 1, from 214 to 422: score 46.3, E = 1.3e-12
                   *->ildyvftviFtlEmllkiialgfklhsr...iafkYlrspwNilDfl
                      ++ + +++ + +E    i++  +   +   ++ + +l+ +wN+ D++
    KIAA1616   214    WIVISYIFTLGIEKMREILMSEP---GKllqKVKVWLQEYWNVTDLI 257  

                   vvlpslislilsllgggsegdlyvreskdstlse.gspgllsvlrllRll
                   ++l++ +++il+l+++                + +  ++++  ++++ + 
    KIAA1616   258 AILLFSVGMILRLQDQ----------------PFrSDGRVIYCVNIIYWY 291  

                   .RvLRllrlirrapglfRWelrtlWelnslgrslksllnvllllllllfi
                    R   ll ++ +++      l+++  + ++g+++++++++++++l++l+ 
    KIAA1616   292 iR---LLDIFGVNKY-----LGPY--VMMIGKMMIDMMYFVIIMLVVLMS 331  

                   FaiigvqlFggklnkccnpingntnFdsfgnaflwlFqtmTteGwgdvmp
                   F+++ + + + ++ +++          ++++  +w++        g+v +
    KIAA1616   332 FGVARQAILFPNEEPSW------KLAKNIFYMPYWMI-----Y--GEVFA 368  

                   dtl.......................agtvlgyiyfvsfiilgsflllNL
                   d ++++ ++++++++++  + ++ +++  ++  i +  + +++++ll+NL
    KIAA1616   369 DQIdppcgqnetredgkiiqlppcktGAWIVPAIMA-CYLLVANILLVNL 417  

                   fiavi<-*
                   +iav    
    KIAA1616   418 LIAVF    422  

PF00520.21.ls: domain 1 of 1, from 214 to 422: score 48.1, E = 2.7e-11
                   *->ildyvftviFtlEmllkiialgfklhsr...iafkYlrspwNilDfl
                      ++ + +++ + +E    i++  +   +   ++ + +l+ +wN+ D++
    KIAA1616   214    WIVISYIFTLGIEKMREILMSEP---GKllqKVKVWLQEYWNVTDLI 257  

                   vvlpslislilsllgggsegdlyvreskdstlse.gspgllsvlrllRll
                   ++l++ +++il+l+++                + +  ++++  ++++ + 
    KIAA1616   258 AILLFSVGMILRLQDQ----------------PFrSDGRVIYCVNIIYWY 291  

                   .RvLRllrlirrapglfRWelrtlWelnslgrslksllnvllllllllfi
                    R   ll ++ +++      l+++  + ++g+++++++++++++l++l+ 
    KIAA1616   292 iR---LLDIFGVNKY-----LGPY--VMMIGKMMIDMMYFVIIMLVVLMS 331  

                   FaiigvqlFggklnkccnpingntnFdsfgnaflwlFqtmTteGwgdvmp
                   F+++ + + + ++ +++          ++++  +w++        g+v +
    KIAA1616   332 FGVARQAILFPNEEPSW------KLAKNIFYMPYWMI-----Y--GEVFA 368  

                   dtl.......................agtvlgyiyfvsfiilgsflllNL
                   d ++++ ++++++++++  + ++ +++  ++  i +  + +++++ll+NL
    KIAA1616   369 DQIdppcgqnetredgkiiqlppcktGAWIVPAIMA-CYLLVANILLVNL 417  

                   fiavi<-*
                   +iav    
    KIAA1616   418 LIAVF    422  

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