hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-07482433/chunk_1/iprscan-20080502-07482433.nocrc
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Query sequence: KIAA1613
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
PF00324.11.fs Amino acid permease                          75.4    6.2e-20   1
PF00324.11.ls Amino acid permease                          10.6    4.8e-06   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
PF00324.11.ls   1/1       1   382 [.     1   527 []    10.6  4.8e-06
PF00324.11.fs   1/1       4   352 ..    25   439 ..    75.4  6.2e-20

Alignments of top-scoring domains:
PF00324.11.ls: domain 1 of 1, from 1 to 382: score 10.6, E = 4.8e-06
                   *->HvqmialGgviGtGLfvgsgvvlaqaGpaglpllgyliagvviflvm
                                           +  +aGp g+ +++++ia v ++l +
    KIAA1613     1    ---------------------AKEMAGP-GV-IVSFIIAAVASILSG 24   

                   lslgEmstngpvvsGsfytyasrflgpslGfatGwnylltvYwfswvfvi
                   ++++E+ + +p  +Gs+yty++  +g+ ++f++Gwn       + ++++ 
    KIAA1613    25 VCYAEFGVRVPKTTGSAYTYSYVTVGEFVAFFIGWN-----LILEYLIGT 69   

                   aleltaasiliqfwesfpdipylwvwgsivdSgpndiRvI..........
                   a+++ a+s+ +  + +++ i+  w+     dS       +++ ++ ++++
    KIAA1613    70 AAGASALSSMFDSL-ANHTIS-RWMA----DS-------Vgtlnglgkge 106  

                   .......gavfivvlliinlvgvKgygeaEfwfalikviaiigfiivgav
                   ++ ++  ++++ v+++ii + gvK +  +  +++++ +   +  +i g++
    KIAA1613   107 esypdllALLIAVIVTIIVALGVKNSIGFNNVLNVLNLAVWVFIMIAGLF 156  

                   viillfgggpndgllfhaigfrylgdpgaifknnfppgfapspgtgsFlg
                   +i         +g          ++  g     ++p+g          +g
    KIAA1613   157 FI---------NG---------KYWAEGQ----FLPHG---------WSG 175  

                   flsvfviaaFaFtGielvgiaAgEsknPrKaiPkAilqvvwritifYils
                   +l ++++++ aF G+ +++++++E+knP  +iP Ai   +++ +  Y+ +
    KIAA1613   176 VLQGAATCFYAFIGFDIIATTGEEAKNPNTSIPYAITASLVICLTAYVSV 225  

                   llaigllvpwndpglladsasaFFdCkpdcsaSPfviafknlgikglahl
                   +++++l vp+  ++ ++                P++  f+ +g  ++ ++
    KIAA1613   226 SVILTLMVPYYTIDTES----------------PLMEMFVAHGFYAAKFV 259  

                   inaviLtaaLSaansslysgsRmlyaLArdglaPikkflkkvdks.gvPl
                   + ++  + ++ ++++sl+ ++R++ya+A dgl+   +fl+ v+ ++  P+
    KIAA1613   260 VAIGSVAGLTVSLLGSLFPMPRVIYAMAGDGLLF--RFLAHVSSYtETPV 307  

                   raillstaisllavavlwliillaslnpaapivfnfllaisgliglivwl
                   +a ++s ++++l+        ll+sl                        
    KIAA1613   308 VACIVSGFLAALLA-------LLVSLRDL--------------------- 329  

                   lislshlrfRkafkyqgrsidelpfkaplgpfgvilalaaliiilliqay
                                                  +++i +l+a +++ +  ++
    KIAA1613   330 -----------------------------IEMMSIGTLLAYTLVSVCVLL 350  

                   yaflpvpkgpktwgaadfaalyltvllfiilligyklhvknkkpqvlk<-
                     ++p              + + +++ f+      + ++k +++   +  
    KIAA1613   351 LRYQP-------------ESDIDGFVKFL---SEEHTKKKEGILADCE   382  

                   *
                    
    KIAA1613     -   -    

PF00324.11.fs: domain 1 of 1, from 4 to 352: score 75.4, E = 6.2e-20
                   *->qaGpaglpllgyliagvviflvmlslgEmstngpvvsGsfytyasrf
                      +aGp g+ +++++ia v ++l +++++E+ + +p  +Gs+yty++  
    KIAA1613     4    MAGP-GV-IVSFIIAAVASILSGVCYAEFGVRVPKTTGSAYTYSYVT 48   

                   lgpslGfatGwnylltvYwfswvfvialeltaasiliqfwesfpdipylw
                   +g+ ++f++Gwn       + ++++ a+++ a+s+ +  + +++ i+  w
    KIAA1613    49 VGEFVAFFIGWN-----LILEYLIGTAAGASALSSMFDSL-ANHTIS-RW 91   

                   vwgsivdSgpndiRvI.................gavfivvlliinlvgvK
                   +     dS       +++ ++ ++++++ ++  ++++ v+++ii + gvK
    KIAA1613    92 MA----DS-------VgtlnglgkgeesypdllALLIAVIVTIIVALGVK 130  

                   gygeaEfwfalikviaiigfiivgavviillfgggpndgllfhaigfryl
                    +  +  +++++ +   +  +i g+++i         +g          +
    KIAA1613   131 NSIGFNNVLNVLNLAVWVFIMIAGLFFI---------NG---------KY 162  

                   gdpgaifknnfppgfapspgtgsFlgflsvfviaaFaFtGielvgiaAgE
                   +  g     ++p+g          +g+l ++++++ aF G+ +++++++E
    KIAA1613   163 WAEGQ----FLPHG---------WSGVLQGAATCFYAFIGFDIIATTGEE 199  

                   sknPrKaiPkAilqvvwritifYilsllaigllvpwndpglladsasaFF
                   +knP  +iP Ai   +++ +  Y+ ++++++l vp+  ++ ++       
    KIAA1613   200 AKNPNTSIPYAITASLVICLTAYVSVSVILTLMVPYYTIDTES------- 242  

                   dCkpdcsaSPfviafknlgikglahlinaviLtaaLSaansslysgsRml
                            P++  f+ +g  ++ +++ ++  + ++ ++++sl+ ++R++
    KIAA1613   243 ---------PLMEMFVAHGFYAAKFVVAIGSVAGLTVSLLGSLFPMPRVI 283  

                   yaLArdglaPikkflkkvdks.gvPlraillstaisllavavlwliilla
                   ya+A dgl+   +fl+ v+ ++  P++a ++s ++++l+        ll+
    KIAA1613   284 YAMAGDGLLF--RFLAHVSSYtETPVVACIVSGFLAALLA-------LLV 324  

                   slnpaapivfnfllaisgliglivwllislshlrfR<-*
                   sl           + +  +++l++++l+s++ l +R   
    KIAA1613   325 SLRDL--------IEMMSIGTLLAYTLVSVCVLLLR    352  

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