# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fj12845.fasta.huge -Q ../query/KIAA1613.ptfa ./tmplib.25089 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1613, 686 aa
 vs ./tmplib.25089 library

1986819 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 3.2742+/-0.00434; mu= 22.8732+/- 0.298
 mean_var=72.0975+/-16.725, 0's: 0 Z-trim: 2  B-trim: 0 in 0/40
 Lambda= 0.151048

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0245  ( 552 res)   ha07016                     ( 552)  169 46.7 6.7e-06


>>KIAA0245  ( 552 res)   ha07016                          (552 aa)
 initn: 149 init1:  73 opt: 169  Z-score: 197.8  bits: 46.7 E(): 6.7e-06
Smith-Waterman score: 234;  21.469% identity (54.520% similar) in 354 aa overlap (10-354:118-451)

                                    10        20        30         
KIAA16                      AKEMAGPGVIVSFIIAAVASILSGVCYAEFGVRVPKTTG
                                     .. . :... :.....::::.:. . :. :
KIAA02 VSLVVGNMIGSGIFVSPKGVLVHTASYGMSLIVWAIGGLFSVVGALCYAELGTTITKS-G
        90       100       110       120       130       140       

      40        50        60        70        80        90         
KIAA16 SAYTYSYVTVGEFVAFFIGWNLILEYLIGTAAGASALSSMFDSLANHTISRWMADSVGTL
       ..:.:   . : :.::.  :   .  :.   .: . ..  :   ::. :.     :  . 
KIAA02 ASYAYILEAFGGFIAFIRLW---VSLLVVEPTGQAIIAITF---ANYIIQ----PSFPSC
        150       160          170       180          190          

     100       110         120          130       140       150    
KIAA16 NGLGKGEESYPDLLA--LLIAVIVTIIVALG---VKNSIGFNNVLNVLNLAVWVFIMIAG
       .         :  ::  :: :. . ... ..   :: .   .....  .... . :.. :
KIAA02 D---------PPYLACRLLAAACICLLTFVNCAYVKWGTRVQDTFTYAKVVALIAIIVMG
                 200       210       220       230       240       

          160         170        180        190       200       210
KIAA16 LFFINGKYWAEGQ--FLPHGWS-GVLQGAA-TCFYAFIGFDIIATTGEEAKNPNTSIPYA
       :  .   .  . :  :   .:. : :. :  . .... :.: .  . :: :::. ..: :
KIAA02 LVKLCQGHSEHFQDAFEGSSWDMGNLSLALYSALFSYSGWDTLNFVTEEIKNPERNLPLA
       250       260       270       280       290       300       

              220       230       240       250       260       270
KIAA16 ITASLVICLTAYVSVSVILTLMVPYYTIDTESPLMEMFVAHGFYAAKFVVAIGSVAGLTV
       :  :. :    :. ..:    ..    . . . .   :. . :   .... :. . .   
KIAA02 IGISMPIVTLIYILTNVAYYTVLNISDVLSSDAVAVTFADQTFGMFSWTIPIAVALSCFG
       310       320       330       340       350       360       

              280       290       300       310       320       330
KIAA16 SLLGSLFPMPRVIYAMAGDGLLFRFLAHVSSYTETPVVACIVSGFLAALLALLVSLRDLI
       .: .:.:   :.... . .: :  .:. .     ::. : . .  .: .  .. .. .::
KIAA02 GLNASIFASSRLFFVGSREGHLPDLLSMIHIERFTPIPALLFNCTMALIYLIVEDVFQLI
       370       380       390       400       410       420       

              340       350       360       370       380       390
KIAA16 EMMSIGTLLAYTLVSVCVLLLRYQPESDIDGFVKFLSEEHTKKKEGILADCEKEACSPVS
       ...:..  .   :  :  : ::..                                    
KIAA02 NYFSFSYWFFVGLSVVGQLYLRWKEPKRPRPLKLSVFFPIVFCICSVFLVIVPLFTDTIN
       430       440       450       460       470       480       




686 residues in 1 query   sequences
1986819 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:10:13 2008 done: Thu Dec 18 15:10:14 2008
 Total Scan time:  0.540 Total Display time:  0.010

Function used was FASTA [version 34.26.5 April 26, 2007]