# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fj11544.fasta.huge -Q ../query/KIAA1610.ptfa ./tmplib.25089 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1610, 484 aa vs ./tmplib.25089 library 1987021 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 8.8413+/-0.00694; mu= -6.0272+/- 0.467 mean_var=231.0798+/-56.091, 0's: 0 Z-trim: 10 B-trim: 0 in 0/40 Lambda= 0.084371 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1193 ( 544 res) fg00739 ( 544) 983 132.4 7.2e-32 KIAA0309 ( 3053 res) hg00096s1 (3053) 203 38.1 0.01 KIAA0458 ( 1552 res) ef01252 (1552) 197 37.2 0.01 >>KIAA1193 ( 544 res) fg00739 (544 aa) initn: 936 init1: 717 opt: 983 Z-score: 664.0 bits: 132.4 E(): 7.2e-32 Smith-Waterman score: 983; 44.557% identity (67.848% similar) in 395 aa overlap (3-381:41-419) 10 20 30 KIAA16 LVHDFDDERTLEEEEMMEGETNFSSEIEDLAR :.:. . : .. ..:: . .:. : . KIAA11 PRVVSCLEHSLCPGEPGLQTTAVVSMGSGDHQFNLAEILSQNYSVRGECEEASRCPDKPK 20 30 40 50 60 70 40 50 60 70 80 KIAA16 E----------GDMPIHELLSLYGYGSTVRLPEEDEEEEEEEEEGEDDEDADNDDNSGCS : .:::. :::.:::: : .. ..: :: .: : KIAA11 EELEKDFISQSNDMPFDELLALYGY-------EASDPISDRESEG-----GDVAPNLPDM 80 90 100 110 90 100 110 120 130 KIAA16 GENKEENIKD--SSGQEDETQSSNDDPSQSVASQDAQEIIRPRRCKYFDTNSEVEE---- .::. :: :. .:.::::: :: . ::.:..:.... : . : .. . : KIAA11 TLDKEQIAKDLLSGEEEEETQSSADDLTPSVTSHEASDLFPNRSGSRFLADEDREPGSSA 120 130 140 150 160 170 140 150 160 170 180 190 KIAA16 ESEEDEDYIPSEDWKKEIMVGSMFQAEIPVGICRYKENEKVYENDDQLLWDPEYLPEDKV :. .:: .:.. ::::::: .:::.. .. .. ::.:::.::::::: ::: .: KIAA11 SSDTEEDSLPANKCKKEIMVGPQFQADLS-NLHLNRHCEKIYENEDQLLWDPSVLPEREV 180 190 200 210 220 230 200 210 220 230 240 250 KIAA16 IIFLKDASRRTGDEKGVEAIPEGSHIKDNEQALYELVKCNFDTEEALRRLRFNVKAAREE :: : .: : . .::: .::.::::::::::::..::::::::::::. :. KIAA11 EEFLYRAVKRRWHEMAGPQLPEGEAVKDSEQALYELVKCNFNVEEALRRLRFNVKVIRDG 240 250 260 270 280 290 260 270 280 290 300 310 KIAA16 LSVWTEEECRNFEQGLKAYGKDFHLIQANKVRTRSVGECVAFYYMWKKSERYDFFAQQTR : .:.::::::::.:....::.:::::::::::::::::: .::.::::::::.:::::: KIAA11 LCAWSEEECRNFEHGFRVHGKNFHLIQANKVRTRSVGECVEYYYLWKKSERYDYFAQQTR 300 310 320 330 340 350 320 330 340 350 360 370 KIAA16 FGKKKYNLHPGVTDYMDRLLDESESAASSRAPSPPPTASNSSNSQSEKEDGTVSTANQNG .:..:: . :.:: :. :: :. . .: : : . .. .. . :::.. .. : KIAA11 LGRRKY-VPSGTTD-ADQDLDGSDPDGPGR-PRPEQDTLTGMRTDPLSVDGTAGGLDEPG 360 370 380 390 400 410 380 390 400 410 420 430 KIAA16 VSSNGPGEILNKEEVKVEGLHINGPTGGNKKPLHADMDTNGYETDNLTTDPKLAHMTARN :.:.: KIAA11 VASDGLPSSEPGPCSFQQLDESPAVPLSHRPPALADPASYQPAVTAPEPDASPRLAVDFA 420 430 440 450 460 470 >>KIAA0309 ( 3053 res) hg00096s1 (3053 aa) initn: 297 init1: 150 opt: 203 Z-score: 140.8 bits: 38.1 E(): 0.01 Smith-Waterman score: 213; 34.416% identity (62.338% similar) in 154 aa overlap (6-144:393-530) 10 20 30 KIAA16 LVHDFDDERTLEEEEMMEGETNFSSEIEDLAREGD :.: :. ::..:::.. . :. .:::::. KIAA03 PPSAVTQRNKQPWHPDEDDEEFTANEEEAEDEEDTIAAEEQLEGEVDHAMELSELAREGE 370 380 390 400 410 420 40 50 60 70 80 KIAA16 MPIHELLSLY------GYGSTVRLPEEDEEEEEE-----EEEGE-DDEDADNDDNSGCSG . ..:::. : : ::. .:::.: . : :: . :. ..:.:. : KIAA03 LSMEELLQQYAGAYAPGSGSS---EDEDEDEVDANSSDCEPEGPVEAEEPPQEDSSSQSD 430 440 450 460 470 90 100 110 120 130 140 KIAA16 --ENKEENIKDSSGQEDETQ-SSNDDPSQSVASQDAQEIIRPRRCKYFDTNSEVEEESEE :.. :. .: ..:.::. :: .. :.: :.::: ..:...:: :: KIAA03 SVEDRSEDEEDEHSEEEETSGSSASEESESEESEDAQ------------SQSQADEE-EE 480 490 500 510 520 150 160 170 180 190 200 KIAA16 DEDYIPSEDWKKEIMVGSMFQAEIPVGICRYKENEKVYENDDQLLWDPEYLPEDKVIIFL :.:. KIAA03 DDDFGVEYLLARDEEQSEADAGSGPPTPGPTTLGPKKEITDIAAAAESLQPKGYTLATTQ 530 540 550 560 570 580 >>KIAA0458 ( 1552 res) ef01252 (1552 aa) initn: 265 init1: 156 opt: 197 Z-score: 140.8 bits: 37.2 E(): 0.01 Smith-Waterman score: 202; 25.877% identity (55.702% similar) in 228 aa overlap (153-366:271-483) 130 140 150 160 170 180 KIAA16 RRCKYFDTNSEVEEESEEDEDYIPSEDWKKEIMVGSMFQAEIPVGICRYKENEKVYENDD :: :: ::..: . . . . . KIAA04 AAREFKARVDSFFYILGYNPETRRLNSTQGEIRVGPSHQAKLPDLQPFPSPDGDTVTQHE 250 260 270 280 290 300 190 200 210 220 230 KIAA16 QLLWDPEYLPEDKVIIFLKDASRRTGDEKGVE---AIPEG--SHIKDNE--QALYELVKC .:.: : : ....:. :.: . :. . .: . .:. .:: : . KIAA04 ELVWMPGVNDCD-LLMYLR-AARSMAAFAGMCDGGSTEDGCVAASRDDTTLNALNTLHES 310 320 330 340 350 240 250 260 270 280 290 KIAA16 NFDTEEALRRLRFNVKAAREEL--SVWTEEECRNFEQGLKAYGKDFHLIQANKVRTRSVG ..:. .::.:: :: .: . :::.: . : .::. :::.: :. . . .. .: KIAA04 GYDAGKALQRL---VKKPVPKLIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETG 360 370 380 390 400 410 300 310 320 330 340 350 KIAA16 ECVAFYYMWKKSERYDFFAQQTRFGKKKYNLHPGVTDYMDRLLDESESAASSRAPSPPPT : ..:::.:::. . : ..: ... . . : . ... .:: ::. KIAA04 ELITFYYYWKKTPE----AASSRAHRRHRR------QAVFRRIKTRTASTPVNTPSRPPS 420 430 440 450 460 360 370 380 390 400 KIAA16 A-----SNSSNSQSEKEDGTVSTANQNGVSSNGPGEILNKEEVKVEGLHINGPTGGNKKP . :..:... ..:: KIAA04 SEFLDLSSASEDDFDSEDSEQELKGYACRHCFTTTSKDWHHGGRENILLCTDCRIHFKKY 470 480 490 500 510 520 484 residues in 1 query sequences 1987021 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:10:07 2008 done: Thu Dec 18 15:10:07 2008 Total Scan time: 0.440 Total Display time: 0.050 Function used was FASTA [version 34.26.5 April 26, 2007]