hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-07382794/chunk_1/iprscan-20080502-07382794.nocrc
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Query sequence: KIAA1607
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00320                                                 106.4    3.3e-27   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00320    1/5    1007  1047 ..     1    46 []    10.2       12
SM00320    2/5    1057  1096 ..     1    46 []    39.1  5.9e-07
SM00320    3/5    1099  1137 ..     1    46 []    15.0        2
SM00320    4/5    1139  1186 ..     1    46 []    24.1    0.019
SM00320    5/5    1232  1267 ..     1    46 []    17.9     0.71

Alignments of top-scoring domains:
SM00320: domain 1 of 5, from 1007 to 1047: score 10.2, E = 12
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++k+l+t++   +  + ++++    +     p+ ++++++   +++W
    KIAA1607  1007    SdKVLMTFENLAA--WGRCLCAVCPS-----PTTIVTSGtSTVVCVW 1046 

                   d<-*
                   +   
    KIAA1607  1047 E    1047 

SM00320: domain 2 of 5, from 1057 to 1096: score 39.1, E = 5.9e-07
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                        +l + l gHt+  +Vt++a s +       +ll+sgs+D+t+ lW
    KIAA1607  1057    GlRLRQALYGHTQ--AVTCLAASVTF------SLLVSGSqDCTCILW 1095 

                   d<-*
                   d   
    KIAA1607  1096 D    1096 

SM00320: domain 3 of 5, from 1099 to 1137: score 15.0, E = 2
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                        + +  l++H+   +++++++s+ +        ++s+ + + + lW
    KIAA1607  1099    HlTHVTRLPAHRE--GISAITISDVS------GTIVSCAgAH-LSLW 1136 

                   d<-*
                   +   
    KIAA1607  1137 N    1137 

SM00320: domain 4 of 5, from 1139 to 1186: score 24.1, E = 0.019
                   *->t.kllrtlk...gHtgespVtsvafspdggssdspnllasgs.Dgti
                      ++++l+++++  g +g  ++t+++        d ++++++gs+Dg +
    KIAA1607  1139    NgQPLASITtawGPEG--AITCCCLMEGPAW-DTSQIIITGSqDGMV 1182 

                   rlWd<-*
                   r+W+   
    KIAA1607  1183 RVWK    1186 

SM00320: domain 5 of 5, from 1232 to 1267: score 17.9, E = 0.71
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      t+k+ +t +      +Vt++a+s ++      + l++g++ g i +W
    KIAA1607  1232    TgKPSKTSP------AVTALAVSRNH------TKLLVGDeRGRIFCW 1266 

                   d<-*
                   +   
    KIAA1607  1267 S    1267 

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