hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-07333026/chunk_1/iprscan-20080502-07333026.nocrc
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Query sequence: KIAA1604
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00543                                                 127.8    1.2e-33   1
SM00544                                                 103.4    2.6e-26   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00543    1/1     192   375 ..     1   227 []   127.8  1.2e-33
SM00544    1/1     484   590 ..     1   117 []   103.4  2.6e-26

Alignments of top-scoring domains:
SM00543: domain 1 of 1, from 192 to 375: score 127.8, E = 1.2e-33
                   *->ekkvnglinkLspdnfeslikellklnndlleeeDPnendkellkel
                       k++nglink++ +n++ +i+ell++n+ +             +  l
    KIAA1604   192    KKSINGLINKVNISNISIIIQELLQENIVR------------GRGLL 226  

                   ielifekaveepglqDklnfipayArLcalLnaknpdFgsllldrlqeeF
                    +++++++ ++p       f ++yA+L+a++n+k+p++g+l l rl+ +F
    KIAA1604   227 SRSVLQAQSASP------IFTHVYAALVAIINSKFPQIGELILKRLILNF 270  

                   ekrkddeekeklepkQvicdaeeeeleeleeeeeknrkrrlglvrFlgEL
                   +k                              ++++++ +l   +F ++L
    KIAA1604   271 RK----------------------------GYRRNDKQLCLTASKFVAHL 292  

                   ynfqvltskiilellkelledltefslecllslLetcGkdLeekspklld
                   +n+ v ++ + le l +lle +t++s+e+++ +L+ cG +L+++sp+ ++
    KIAA1604   293 INQNVAHEVLCLEMLTLLLERPTDDSVEVAIGFLKECGLKLTQVSPRGIN 342  

                   ellerlqdill...lsprlrfmledlielrknk<-*
                    ++erl++il+++++++r+++m+e ++++rk+    
    KIAA1604   343 AIFERLRNILHeseIDKRVQYMIEVMFAVRKDG    375  

SM00544: domain 1 of 1, from 484 to 590: score 103.4, E = 2.6e-26
                   *->lkkkifliikEylssgDtdEAvhclleLklpeefhhevvkvlltlaL
                      ++++i+l+i+++l   D++E++h+ll+++ pe++ +e++ ++l ++ 
    KIAA1604   484    FRRTIYLAIQSSL---DFEECAHKLLKMEFPESQTKELCNMILDCCA 527  

                   eeatvkrtyremysvLLsrlcqanvistkqfekgFwrllesleDlelDiP
                   ++    rty+++ ++L+ r+c+ ++ + ++fe  F++ ++++++le++  
    KIAA1604   528 QQ----RTYEKFFGLLAGRFCMLKKEYMESFEGIFKEQYDTIHRLETN-- 571  

                   dalrnLaeFlarlisdgiLp<-*
                    +lrn+a+ +a+l+ ++ Lp   
    KIAA1604   572 -KLRNVAKMFAHLLYTDSLP    590  

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